| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1549 |
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| Symbol | |
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| ID | 4277785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1845394 |
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| End bp | 1846083 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134329 |
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| Product | exonuclease, RNase T and DNA polymerase III |
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| Protein accession | YP_750238 |
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| Protein GI | 114562725 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.418832 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGGCCAGTT TTTGGTGGAT AAAAGCGGTG TTATGGCATA AAAAAATGAC CACTTTACCT
TCATTACTCA ACACGTATTT AGAAGCAATA ACGCCTGCGT TAACAAAACC ATTTCTAGAT
GCACCTTTGA TGGCGATTGA TCTTGAAATG ACTGGCTTAG ATCCAATCCA TGATCAAGTC
ATCAGTATCG GTTTAGTGCC GATTATCAAC GGGGTCATTC CGCTTGATAA AGCACAGCAT
ATGATGATTT CTATTAGCGG CAGTGTGGGG CAGAGCGCGA CGGTTCACGG TATTGTGGAT
AACCAATTGC ACATGGCCTT AACGTTAGCA GAGGCAATTG ATTGGTTTTT ATCAAAAACA
AAGGGCTATA TTTTGGTCGC GCACCATGCA CCGTTGGACA TACAGTTTAT TCAGCAGCAG
TTGATACGCT GTTTTGGACA ATCAATTCCG TTGGTATTTA TTGATACACT AGCCATAGAA
AAGAAGCGCT GCTTAATGCA ACAGCCTGTA TTAAAAGAAG GTTCGTTACG CTTGAATGCA
AGCCGTACAC GTTACCGTTT ACCCGTTTAT TCTGCTCACA ATGCGCTTAT TGATGCATTA
TCTTGTGCTG AATTGTTGCT GGCTCAAGTT TCGGCGATGG GTGATATTAA AAAGTTGTCG
GTTAAAGACT TAATCAATGT GTCTCGTTAG
|
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| Protein sequence | MASFWWIKAV LWHKKMTTLP SLLNTYLEAI TPALTKPFLD APLMAIDLEM TGLDPIHDQV
ISIGLVPIIN GVIPLDKAQH MMISISGSVG QSATVHGIVD NQLHMALTLA EAIDWFLSKT
KGYILVAHHA PLDIQFIQQQ LIRCFGQSIP LVFIDTLAIE KKRCLMQQPV LKEGSLRLNA
SRTRYRLPVY SAHNALIDAL SCAELLLAQV SAMGDIKKLS VKDLINVSR
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