| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1490 |
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| Symbol | |
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| ID | 4278056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1778819 |
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| End bp | 1782193 |
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| Gene Length | 3375 bp |
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| Protein Length | 1124 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134270 |
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| Product | ribonuclease, Rne/Rng family protein |
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| Protein accession | YP_750179 |
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| Protein GI | 114562666 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.326409 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGTA TGTTAATTAA TGCAACTCAA TCAGAAGAGT TGCGCGTAGC CCTAGTAGAT
GGGCAAGAAC TGTATGATTT AGACATTGAA AGTCCTGGTC ACGAACAGAA AAAATCAAAT
ATCTATAAAG GTAAAATCAC TCGAGTAGAA CCGTCACTTG AAGCTGCATT TGTTGATTAC
GGTGCAGATC GTCACGGTTT TTTACCTCTC AAAGAAATTG GTCGCGAATA CTTCCCAAAA
GGTTATTCAT TCCAAGGCCG TCCAAACATT AAAGAAGTGT TACAAGAAGG CCAAGAGGTC
ATCGTTCAGA TAGATAAAGA AGAACGAGGC AACAAAGGCG CTGCACTAAC TACTTTTATT
AGTCTTGCTG GATCTTATTT AGTCTTAATG CCAAATAACC CTCGTGCTGG CGGTATTTCT
CGTCGTATCG AAGGTGATGA ACGTACAGAA CTAAAAGAAG CAATGGCTGA GTTAGAAGTA
CCTAATGGTA TGGGCTTGAT TGTGCGTACT GCTGGTGTTG GTAAAGAATC AACAGAGCTA
AAGTGGGACT TAAAAGTACT ACAACATCAT TGGGATGCTA TTCAAGAAGC TGCTCAAAGT
AAAGCTGCAC CATTCTTAAT CCACCAAGAA AGTAACGTGA TTGTTCGCGC TATTCGTGAC
TATTTACGTC GTGATGTAGG CGAAATCCTT ATCGATCACC CACGTATTTT CGAAGAAGCT
AAATTGCATA TTGGTTTAGT GCGTCCTGAT TTTGTTGAAC GTGTAAAGCT ATATGACTCA
GAAGTACCAC TGTTTACTCA CTTCCAAATA GAGTCTCAAA TTGAGTCAGC GTTCCAACGC
GAAGTGCGTT TACCTTCAGG TGGATCAATT GTAATTGACC CAACAGAAGC ATTAACGTCT
ATCGATATCA ACTCAGCCCG TGCAACTAAA GGCGGCGACA TTGAAGAAAC TGCACTAAAC
ACTAACCTTG AAGCTGCTGA TGAAATTGCT CGTCAATTAC GTCTTCGTGA TTTAGGTGGT
TTAGTGGTTA TCGACTTTAT CGATATGACA CCTGTTCGTC ATCAGCGTGA AGTTGAAAAT
CGTTTACGTG ATGCAGTACA TCATGACCGT GCTCGTGTGC AATTAGGTCG TATTTCTCGA
TTTGGTTTGA TGGAAATGTC GCGTCAGCGT CTACGTCCAT CGCTAGAAGA GTCTGCCGCT
CATTTGTGCC CTCGTTGTCA TGGTCAAGGC ACTATTCGTA GTACCGAATC TTTAGCATTA
TCGATTTTAC GATTAATGGA AGAAGAAGCC ATTAAAGAAA ACACCACACA AATCGAAGCG
ATTGTGCCTG TTGATGTTGC TGCGTTCTTA CTAAACGAAA AACGTAAAGC GATTCGTATT
ACAGAAGAGC GTCACCAAGT TGAAGTGTAC ATCATTCCAG ATGCACACAT GCAAACACCA
GATTACCGTG TAGTGCGTCG TAAGAGTGAT GATGAAGTCA GTGAATCTAG CTATAAGCGA
GTAGAACAGC CTGTCGCAAA ATTGTATGAG CCTCGCAAGC TTGAGCGTGC AGCATCTCCT
GAACCTGCAT TAAAAGGCTT CGCAGCGCCA CAAAAAGCAG CTGAAGATAC AGTAAAAGCC
ACACCAGTAA ATGTCGCTCC TGTGGCAACG TCTAATCAGC CAAGTTTATT CACTCGAATG
ATCTCTGCCA TTAGCGCTTT ATTTTCTGGA AGTGAAGCTG AGGTTAAAGA GACCAAAGCA
GCAGTATCTA CTAAAGAATC GACTCAAACT AACACTCGTC GTAACACCCG TCGTAATGAC
ACTCGTAACG ACAGCGCTAA CCGTAATGAC AAACGCAATG ACAGTCGCCG TCAACGTAAT
GACAGCGACA AATCGAAAGA CGGCACAGAA GCTCGTTCTC AGAATAAGCG TAATGAACGT
AATAGCAGAA ATACAGTTCA AGATGACAAC GCCAAAAACA AACCGAAAAC TGAGAAAGTT
GACAAGCCAT TAGCTGTCAA TGAAACCAAA GCAACAGATG CTAAAGTTGC CGAAGTTAAA
GTCGCTACAG AAAAATCTCC AAAACAAGAA GCTGCTCGTG AGCGTCGCCA ACGTCGTAAT
TTACGTCGTA AAGTGCGTAT TGAAAACGAA CAGAGTGAAG CATTACCAAC AACCGATGTT
AATGATAATA AATCAACTGA GCAATCAGTT GAGGTAATGA CATCAGAACC TAAAGCGGTA
GAGTCAAAAG TAGCTGAAGA TAAAACATCA GAAACGAGAG CGCCACGCAG TCGTCGTCAA
CCTCGTAAAG AGAAGACTGA ACAGGCGGTT GAAGCGCCAG CTGAAAATGA AACAGAGCAA
GCAACTGATC CAGTTACTGA AGTAGCAAAT GTTACCAGTA CTGCTGCTCC AGTTGAAACT
GACGCTACTG CCGTGGTTGA AGTAAAAGCA GAAACAACTC AAGCAGATGT TGATACTGTC
ACTGAAACGG TAGTTGCTAG CACTGACGTT GCAGCTGAAA CTGATGAGTC AAGCTCGAGC
GCTGAAGATG CTACAACAGA CAGCGAAGCT GAAGGCCGTG AAGGTCAACG TCGTAGTCGT
CGTAGTCCTC GTCACTTACG TGCAGCAGGT CAACGTCGTC GTCGTGATGA TGAAACAGGC
TCTACACAAC CAGCTGTTTT CACACCTAAT GATGAGTTAG AGAAGCAATT AGACGCAGAG
CAAGCTAGAA CTCAAGCACA AGCTCCTGTA ACTGAGGCTA TTGTTGAATC CGTTACTAAA
CCTGCTGAAA CGGTTAGCAC TGCTGCTGAA ACCGCTACTA AGCCGGTTGA AGTGCTTAAA
GCTGAAGTTA ACAAAGCTAA TGCAGCACCC GTTAATGTTG AAAAAACTGA AACGCCAGTA
GAAATAAAGG AAGTACCTCA AGCAGTAAAA GCACCTGAGG CCCCTGAACC TAAAGCTGAA
GTAGAAGTTG TTAAAACAAC GGTTGATGTT GAAGCTAAAC AAACCACTGT GGCAAATACC
GCAGTTGTTG AAGCTGAAAA AGCTGCAGCG TTAACTAGCA AGCAAGATAA AACGGTTGCG
GCCAATTCAT CTGCGCCTAT GGCTAAGCCT GCTGCAATTG TGCGTCAAGC TAAACCTGAA
GTCGTAAAAG AAGTCGCGGC GACAATAGCA GAGACGGTTT CTACTGAAGC AGCGCCATCA
ACCAAAGTCC CCGTAAAGGC AAGTCGCTTT GGTTCTATGG TGTCATCTGA CACGACTAAA
CCTACAGTAG ATGTCCGTGA GCAGAAAGCG GTACCTCAAG GACGTACTTA CGAAGCTCAA
GCGACTGACA GCAAGGTTAC GAAAGTAGCG AAGAATAACA GTGCATCTGC TGATATGACT
CGCCCTGGAG AGTAA
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| Protein sequence | MKRMLINATQ SEELRVALVD GQELYDLDIE SPGHEQKKSN IYKGKITRVE PSLEAAFVDY
GADRHGFLPL KEIGREYFPK GYSFQGRPNI KEVLQEGQEV IVQIDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDERTE LKEAMAELEV PNGMGLIVRT AGVGKESTEL
KWDLKVLQHH WDAIQEAAQS KAAPFLIHQE SNVIVRAIRD YLRRDVGEIL IDHPRIFEEA
KLHIGLVRPD FVERVKLYDS EVPLFTHFQI ESQIESAFQR EVRLPSGGSI VIDPTEALTS
IDINSARATK GGDIEETALN TNLEAADEIA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN
RLRDAVHHDR ARVQLGRISR FGLMEMSRQR LRPSLEESAA HLCPRCHGQG TIRSTESLAL
SILRLMEEEA IKENTTQIEA IVPVDVAAFL LNEKRKAIRI TEERHQVEVY IIPDAHMQTP
DYRVVRRKSD DEVSESSYKR VEQPVAKLYE PRKLERAASP EPALKGFAAP QKAAEDTVKA
TPVNVAPVAT SNQPSLFTRM ISAISALFSG SEAEVKETKA AVSTKESTQT NTRRNTRRND
TRNDSANRND KRNDSRRQRN DSDKSKDGTE ARSQNKRNER NSRNTVQDDN AKNKPKTEKV
DKPLAVNETK ATDAKVAEVK VATEKSPKQE AARERRQRRN LRRKVRIENE QSEALPTTDV
NDNKSTEQSV EVMTSEPKAV ESKVAEDKTS ETRAPRSRRQ PRKEKTEQAV EAPAENETEQ
ATDPVTEVAN VTSTAAPVET DATAVVEVKA ETTQADVDTV TETVVASTDV AAETDESSSS
AEDATTDSEA EGREGQRRSR RSPRHLRAAG QRRRRDDETG STQPAVFTPN DELEKQLDAE
QARTQAQAPV TEAIVESVTK PAETVSTAAE TATKPVEVLK AEVNKANAAP VNVEKTETPV
EIKEVPQAVK APEAPEPKAE VEVVKTTVDV EAKQTTVANT AVVEAEKAAA LTSKQDKTVA
ANSSAPMAKP AAIVRQAKPE VVKEVAATIA ETVSTEAAPS TKVPVKASRF GSMVSSDTTK
PTVDVREQKA VPQGRTYEAQ ATDSKVTKVA KNNSASADMT RPGE
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