Gene Sfri_1472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1472 
Symbol 
ID4277568 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp1761134 
End bp1761766 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content39% 
IMG OID638134253 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_750162 
Protein GI114562649 
COG category[R] General function prediction only 
COG ID[COG1279] Lysine efflux permease 
TIGRFAM ID[TIGR00948] L-lysine exporter 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCACTT CTGCATTATT TCAAGGACTT ATTCTCGGCT TAGGAATGAT TATTCCAATT 
GGCGCCCAAA ACTCTTACAT ATTAAGTCAG GGAATAAAAC GCAATCACCA CTTTCTCGCG 
GCCACAATTT GTATGTTGTG TGATGTGTTA TTAATTGGTC TAGGTATTTT TGGCGGAGGT 
AAATTAATCG CCAGCAGTGA ATGGCTAATG TTACTTATTG GCTGGGGCGG AGTCACTTTT 
TTAGTTGTTT ATGCAGTTAT GTCGTTCAAA AATGTATGGC GAAATCAGTA CCAAGTTGCA 
ACACACATTG CAGCAGCCAA TAGTCGTAAA AAAATTATCG GCACCACATT TGCGGTCACC 
TTGCTTAACC CTCATGTGTA TTTAGATACT GTGATGATAT TAGGTAGCGT GGGCGGTACT 
TTTGATGGTA ACGAAAAATG GGCATTTGCA ATAGGTACTA TACTGGCATC GGTTTTGTGG 
TTTTATACTA TTGCATTTGG TGCCGCTAAA CTTGCACCCT GGTTAGGTTC ACCTAAAGTT 
CAACGCGTGA TTGATGCCAT AGTCGGCACT ATTATGCTTT TTATCGCCTA TTCAGTATTT 
AATACTTTAT TAATAATACC AACAAACTTA TAG
 
Protein sequence
MATSALFQGL ILGLGMIIPI GAQNSYILSQ GIKRNHHFLA ATICMLCDVL LIGLGIFGGG 
KLIASSEWLM LLIGWGGVTF LVVYAVMSFK NVWRNQYQVA THIAAANSRK KIIGTTFAVT 
LLNPHVYLDT VMILGSVGGT FDGNEKWAFA IGTILASVLW FYTIAFGAAK LAPWLGSPKV 
QRVIDAIVGT IMLFIAYSVF NTLLIIPTNL