| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1467 |
|---|
| Symbol | |
|---|
| ID | 4277563 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 1752289 |
|---|
| End bp | 1754040 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638134248 |
|---|
| Product | type III restriction enzyme, res subunit |
|---|
| Protein accession | YP_750157 |
|---|
| Protein GI | 114562644 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.387336 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAACACT CATCTACTCA CCCCGTAAAT ATCACCTTAC GTGACTATCA ACAACAATCG
GTCGACGCGG CTATAGCTCA CTTCAAGCAC AGCCAACAAT CGGCGGTATT AGTGCTACCT
ACCGGTGCGG GTAAAAGTAT TGTGATTGCC GAACTGGCAC GTATCGCGAA TGGTAATGTG
CTAGTGCTCA CCCATGTAAA AGAATTAGTC GCTCAAAATG CTGAAAAAGT GGGTTTACTC
ACTCAAGAGG CCAACATCTA TTCCGCAGGA TTAAATCAAA AAAAGGCTAA TGGCAAAACC
GTGGTAGCCA GTGTCCAATC AGCCGCTCGC GCCCTAGATA AATTCACTCA AGCATTTTCA
TTAGTGATCA TTGATGAATG CCATCGAGTC AGTAATGAGT CTACTAGCCA ATATCAACAA
CTGCTCACGC ACCTTAAAGC GCGTAATCCT GACATTAAAC TGCTTGGGCT AACTGCCACG
CCTTATCGTT TAGGTTTAGG CTGGATTTAC CGGCACCATT ATCATGGAAA AGTAGGTAAT
ACAGATACAC CTGTATTCGA AAAATGCATT TTTGAACTTC CAATGCGACC ATTGATCAAA
AAAGGTTACT TAACCAAACC AACCATTTTT GACGGACTGA GTGCACAGTA TGATTTTAGT
GAGCTCGTTG CACATGACAG TGGTGAATAT CCACAAATGG AAATCGATTC TTTATTACAT
CATCAAGGAC GAGCAACCAC AGCTATTATC AAACAAGTAA AACAACTTGC TGAACTCCGA
AAAGGTGTAT TGATTTTTGC TGCTACGGTC AGACATGCCA ATGAAGTAAT GACTCTATTA
GACGACGATG CCGCCTTAAT TACCGCTCAA ACGCCACATA GCGAACGTGA TGACATCATC
AATCGCTTTA AAGCCCAACG TCTCAAATAC ATTGTTAACG TTGCCGTATT AACCACAGGC
TTCGATGCTC CTCACGTCGA CCTTATCGCA ATTTTGCGCC CCACCGCATC GGTGAGCCTA
TTCCAACAGA TGATAGGTCG AGGATTACGC TTGGCCCCCA ATAAAGCAGA TTGTTTAGTC
ATTGATTATG CCGCTAATGG TTATGACTTA TTTTACCCGG AAGTCGGTCA AGCCAAACCC
AATAGCAAAT CAGTACCAGT ACAAGTGCAT TGTCCTGTAT GTCAATTTGC TAATACTTTT
TGGGGCCTAG TAGATGGCGA TGGCGATATT ATTGAACATT ATGGCAGACG CTGTCAGGGG
TTAATCGATG AGCTGCAACA GTGTGACTTT AGATTTAGAT CAAAGTCATG CCCTGACTGT
GGAGCGGAAA ATGATATCGC GGCACGTATT TGTCATAGCT GCCAATCAAC CTTAATTGAT
CCCGATAAGC GACTAAAACA AGTACTTAAC GCTCAGCATC ATCACTTATT TAAATGTGAG
CAAATGTTGT TGCGCGATCA AGACAATAAG TTGCTTATTC AATATATTGA TATTGAAGGT
AATGATTTTA AGCGAATGTT TAGCTTCGCC ACACCAGCAC AACGAAAAGC ATTTTATGCG
GTATTTGTTC TCAGTCATAC CCGCACTCCA GGTATACCGC ATCCTCAATA TAATAAAGTA
ACCGATGTAT TGACGGATCA AATTCGATTC AGAAAACCCG ATTTATTATT ACTGAAAAAA
AACAAACATC GCTGGGATTT AGTTGATTCA TTTTTTGACT ATCAAGGCAA ATATAAAATC
GATATGAGTT AA
|
|---|
| Protein sequence | MKHSSTHPVN ITLRDYQQQS VDAAIAHFKH SQQSAVLVLP TGAGKSIVIA ELARIANGNV
LVLTHVKELV AQNAEKVGLL TQEANIYSAG LNQKKANGKT VVASVQSAAR ALDKFTQAFS
LVIIDECHRV SNESTSQYQQ LLTHLKARNP DIKLLGLTAT PYRLGLGWIY RHHYHGKVGN
TDTPVFEKCI FELPMRPLIK KGYLTKPTIF DGLSAQYDFS ELVAHDSGEY PQMEIDSLLH
HQGRATTAII KQVKQLAELR KGVLIFAATV RHANEVMTLL DDDAALITAQ TPHSERDDII
NRFKAQRLKY IVNVAVLTTG FDAPHVDLIA ILRPTASVSL FQQMIGRGLR LAPNKADCLV
IDYAANGYDL FYPEVGQAKP NSKSVPVQVH CPVCQFANTF WGLVDGDGDI IEHYGRRCQG
LIDELQQCDF RFRSKSCPDC GAENDIAARI CHSCQSTLID PDKRLKQVLN AQHHHLFKCE
QMLLRDQDNK LLIQYIDIEG NDFKRMFSFA TPAQRKAFYA VFVLSHTRTP GIPHPQYNKV
TDVLTDQIRF RKPDLLLLKK NKHRWDLVDS FFDYQGKYKI DMS
|
|---|
| |