| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1427 |
|---|
| Symbol | trpD |
|---|
| ID | 4277925 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 1701391 |
|---|
| End bp | 1702434 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638134201 |
|---|
| Product | anthranilate phosphoribosyltransferase |
|---|
| Protein accession | YP_750117 |
|---|
| Protein GI | 114562604 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0547] Anthranilate phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01245] anthranilate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAATC TGCAAACCTT ATTCGACCAT CTGTACCAAG GTAAGCCATT AACTCGCGAA
CAAATGGCAC AAGTGTTTAG CACTATTATT CAAGGTGATA TGCAACCTGC TACCATGGCG
GGTATGTTAG TGGCGCTAAA AATGCGCGGC GAAACCATTG ATGAAATAGC CGGTGCAGCA
GACGCATTAC GCCAAGCCGC TAAACCTTTC CCACGCAGTG ATGCCTCAAA ACAAAGCGGC
ATTGTTGATA TTGTCGGTAC AGGTGGCGAT GGCCATAACA CCATCAACAT TTCGACTACA
GCCGCATTTG TTGCAGCAGC TGCGGGGGCA AAAGTAGCAA AACACGGTAA CCGCAGCGTA
TCAAGCAAGT CTGGTTCTTC TGACTTACTG TCACATTGCG GTATTGCGCT CACCATGGCA
CCAGACGCTG CAAGCCAATG TTTAGATAAG CTTGGCTTAT GTTTTCTATT TGCGCCGCAT
TACCATGGCG GAGTGAAACA CGCAGTACCA GTAAGACAAG CGTTAAAAAC TCGGACCATT
TTTAATGTGC TAGGCCCATT AATTAACCCA GCAAGCCCAG AATTTATGTT GCTGGGCGTC
TATACACTTG AACTCATCGA ACCTATTGCG CAAGTACTTC ATGCCCTTGG GGTTAAACGC
GCTATGGTGG TGTATGGCAG TGGTTTAGAT GAAGTAGCAT TACATGATAA TACTCATGTG
GCAGAACTAA AAGACGGTGT GGTGCGTACT TACCAACTTA GCCCTGAAGA TCTCGGTGTT
AACCGTGCAG ACATAGCACA GCTAACGGGT GGAGAACCAG CAGACAACGC TTTAATCACT
CAAGCCATTT TACAAGGTAA AGGCCTCCCT GCTCATCGAG ATGCCGTGGC GATTAATGCA
GGTTGTGCTT TGTATATCAG TGGTATTTGC GACTCAGTTC AAGCCGGTAC TCAGCTAGCA
CTTGCCACAC TCGCCAGCGG TACAGCTTTT ACCTTATTAA CCGATTTAGC TGCCGCGAGC
CAAGCTGGAG AACACAATGA GTAA
|
|---|
| Protein sequence | MDNLQTLFDH LYQGKPLTRE QMAQVFSTII QGDMQPATMA GMLVALKMRG ETIDEIAGAA
DALRQAAKPF PRSDASKQSG IVDIVGTGGD GHNTINISTT AAFVAAAAGA KVAKHGNRSV
SSKSGSSDLL SHCGIALTMA PDAASQCLDK LGLCFLFAPH YHGGVKHAVP VRQALKTRTI
FNVLGPLINP ASPEFMLLGV YTLELIEPIA QVLHALGVKR AMVVYGSGLD EVALHDNTHV
AELKDGVVRT YQLSPEDLGV NRADIAQLTG GEPADNALIT QAILQGKGLP AHRDAVAINA
GCALYISGIC DSVQAGTQLA LATLASGTAF TLLTDLAAAS QAGEHNE
|
|---|
| |