| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1292 |
|---|
| Symbol | |
|---|
| ID | 4278490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 1532879 |
|---|
| End bp | 1533760 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638134067 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_749983 |
|---|
| Protein GI | 114562470 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTT CAATAGCGAC AGAATTATAT CCTGAAGATT ACTGGTACCG TTCAGACGCT
TACTTGAATA TGGAACCCGA ACTGGACCTT ATTCAAGTGA TTCAACAACT ACATGGAAGT
TTAGATCCTC GGACAGTTTT TGCCTGCTTC GGCAAAATCC TAGGACAACA TTTGCCGATT
AAAGGACTAC AATTGAGCCT AGACAAACAA AAGTTTGTTT GGGGACGTCA CTACGGTATT
GAACTGCAAC GTACTATTAA CGATAACCAA GATACGTTTA TCATAACCTA TCAGTTGTCT
GTACCACTTA GTTCGGCGCA AAAACACACT TTAGGGCAAC TTGAAGGCAT ATTAATTCAA
CCGTTGAATA ATGCGTTGAA GTATCAAAAT ATGTCTAATC AAGCCATGTT TGATGCACTA
ACCCAATTAG GTAATCGTTA TTATTACCGC CAGGCAATCG ACATCGCATT AGCGCGAGCT
AATCGCCAAC AAGGCCAAGT ATCTTTGATT GTATTAGATT TAGATAAATT TAAACAACTT
AACGATGCGC ATGGCCATAA AGTAGGTGAT TATGTATTAG TGGGCTTTGC CGCGTTAATT
AATGAAGCCA TTCGTAATAC AGACCAAGCC TTTAGAATTG GCGGTGATGA GTTTGTGATC
GTTACCCAAG GGGATGCCCA GGCCGCTGCA ATAGTATGCC AACGTATCAT TGATATGATG
CCAAAACATT CAGAACTTAC CGAATATAAC ATTCAGTGCA GTTTAGGCAT TGCGGAGTCA
AAACCGCAGC AACAAGCCGA AAATATATAT GAGCGTGCCG ATAAAGCCAT GTATTCTGCG
AAAGCTGCCG GACGCAACTG CTACCGAATT TGTGCTAATT AG
|
|---|
| Protein sequence | MDFSIATELY PEDYWYRSDA YLNMEPELDL IQVIQQLHGS LDPRTVFACF GKILGQHLPI
KGLQLSLDKQ KFVWGRHYGI ELQRTINDNQ DTFIITYQLS VPLSSAQKHT LGQLEGILIQ
PLNNALKYQN MSNQAMFDAL TQLGNRYYYR QAIDIALARA NRQQGQVSLI VLDLDKFKQL
NDAHGHKVGD YVLVGFAALI NEAIRNTDQA FRIGGDEFVI VTQGDAQAAA IVCQRIIDMM
PKHSELTEYN IQCSLGIAES KPQQQAENIY ERADKAMYSA KAAGRNCYRI CAN
|
|---|
| |