| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1262 |
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| Symbol | |
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| ID | 4277394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1493272 |
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| End bp | 1494153 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638134037 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_749953 |
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| Protein GI | 114562440 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.308846 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCTCAA AAGAAAACGA TGCTGAATAC TCATTAGATA ACGATGACTT ATATGAACAA
ATAGGCTCGG AATATATTGA TGAGAACGCT ACTGCAGATA CCGAATTAGA CGATGACTTA
CACCCTCCCC ATATCGACAT TCTATTTGAA GATGAGCACC TAGTTGCTAT CCATAAGCCT
GCAGGTTTAT TGGTTCATCG TAGTTATTTA GCCCGTAGGG AGCGATTTTT TGCGATGCAG
ATGACTCGTG ATTTAGTGGG CTGCCATGTT TTTCCGGTGC ACCGCCTAGA TAGACCTACA
TCTGGAGTAT TACTGTTTGC CAAATCGAGT GAGGTGGCTC GTGCATTATG TGAGCAATTT
GCTGATCATA GTATTAAGAA GCATTATTTA GCCATTGTTC GTGGCAATAT GCATGAGTCT
GGCACGCTAG ATTATGCCCT AAAACAGGAG TTTGATGATT TAGGCGATAA ACATGTGGAC
CAGAACAAGG CTGCTCAAGA TGCCGTGACG GATTATCAAC CATTATTGAA TACGGAAATA
CCGTTTAGTT CAGGTCGATA CCCAACTAGT CGTTATGGCT TGGTAAAATT AAGCCCTCAT
ACTGGCCGCA AGCACCAATT ACGTCGTCAT ATGGCACATT TACGTCATCC AATTGTTGGT
GATACAACCC ATGGCGATGG TAAACAAAAT AAGTTCTTTC GCGAACATTT TACTATTAAC
CGTTTGTGGT TGATTGCAAA AAGCTTGCAG TTTGTACACC CAGTAACTCA GCAATCAATG
CATATTGAAA CTGAGTTAGA AGCTGAATGG TTGACTGTTT TTAACGCATT TGGCTGGGAT
GATGATCAAT TATCATCAAT GCCAAGTATG TTATTAAGTT AA
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| Protein sequence | MISKENDAEY SLDNDDLYEQ IGSEYIDENA TADTELDDDL HPPHIDILFE DEHLVAIHKP
AGLLVHRSYL ARRERFFAMQ MTRDLVGCHV FPVHRLDRPT SGVLLFAKSS EVARALCEQF
ADHSIKKHYL AIVRGNMHES GTLDYALKQE FDDLGDKHVD QNKAAQDAVT DYQPLLNTEI
PFSSGRYPTS RYGLVKLSPH TGRKHQLRRH MAHLRHPIVG DTTHGDGKQN KFFREHFTIN
RLWLIAKSLQ FVHPVTQQSM HIETELEAEW LTVFNAFGWD DDQLSSMPSM LLS
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