| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1229 |
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| Symbol | |
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| ID | 4278479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1452440 |
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| End bp | 1455490 |
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| Gene Length | 3051 bp |
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| Protein Length | 1016 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134004 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_749920 |
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| Protein GI | 114562407 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.748097 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGTAT CGGCTTATTT ATCAGGCGCA TTAATCTTAA TCAGTGGTAT TGCATTATCG
GGTTGTTTTA GCAGCGGTCA AACTGAGTAT GCTCAACAAG CTAAACGCAC TAGCTTAGGC
GATTTGGCCA ACAAACGCAG CAGCGAAACG GTGGCGAGTG TTGAAATGAG CAAAACTCAA
CGCAGTGCCA AGTTGGCTAA TATTTATCAG CAATTGCTGA CACTTGAGCC CGATCCTGAA
ATCCGGACGC ACGTTGAATA TCGCTTAGCG CAAATCAATA CCGAATCATT TGAAGCCCAG
TCTTATGCAG ACCTCGATGA TGAGTCGCAA CCAGACAGTC AAGTGCTAGC TCAGTTGACT
CAAAACGATG CGGCACTGCA AAAATTAGTT AACGAATATC AACAATTATT GCAGCGTTAT
CCGCAGCGAT CTGAAAACGA ACACATACAA TATCAATTAG CTAAAGCGCT CGATTTACAG
GGCAAGTTGG ATGCAAGTTT GGCTGAAGTT GAATCATTAC TGCGACACTA TCCGCAGACA
ATGTATCTTG CCGAGCTTAA CTTTAGACGC GGTGAAATCT ATTACAACTT ACAGAATTAC
TCTGCAGCCA TTACAGCATA TCAGCAAGTA TTAACCGCTA ATGATAATCA AAAATACCAA
TTGAATAGTT TATATATGCT CGGCTGGTCT GAATTTAAAC TCAATCGACT TGCCAATGCC
GACAAAGCAT TCGTGCAAGT GTTTGAAGCC TTAGTGGCCG GCCAGCAAAG TAATCGTGAT
ATTGCAAACT TAACCTCCGA CAACTTTGCT TTTGAAAAGC TCGGCAGCCG CGCGCAAAAT
TTGGCGATTG ATACCCAAAG AGTATTGAGC ATTTCATTAA GCCAACAACT GCAATCTCAG
TCGTTAGTAT CCTTAGTTAA AGCCAATCAA TCTTTGCCGA ATATCAACTT ATATCAGCAT
GTATTATTTG CCAATTTGGC CCAATTTTTA CTCGACAAAA AACTCGACTA CGATGCAGAA
CTAACTTATC AGGCATATAT AGATTTAGCG TCAGACAATA TCTGGGCAGC TCGCTATTCG
CTAGATTTGC TCGACCTTTA TCAGCGTCAA GGCAAATTTG CAGCAATGCA TCAGCTCAAA
AATGACTATG TTAATCAATA TGGTCTTAGC AGCACATTTT GGGTAAATGC CAACACAGCG
CAGCAAGCAG AGTTATTACC ACAACTGCTT AGCTTTAGTG ACGAGCATAG CCGCCGTTTG
TATGCCGATG CACAAACTCA GCAAGGTGCA CAACGAATTA GCGCTTTCGC ACAGGCTGCC
AGCGCATTAA ACACCTATTT ACAATTGGCC AAATTACCTC AAGCCAGCAA GTTACTCACT
AAAGATATTC TTAATGACGA GTACTTGTTT GCTGACGCCA ATTTTGAAGC AAAACAATAT
CAGCAAGCCC TTGCCAGTTA TTACGCCATT GCCTATGACG CTACAGCAAC GTCTGCGGCC
TTGCGCAAGA TACAACAGCA ATCGGCTTAC GCAACAACCG TCACAGTACG CGAAATCCTT
TCGCAACATG GTCAAAGCCA ACAAAACCAA AATGAACAAC GCAATACTGA TGATTACAAC
ACACTCATTT CACAACGTAA TCAGTTAGAT AAAGAATTTA TCAATCAGTA CCCATCTGAC
AACCGAGCCT TACAGCTCGC CAGTAACGCC GCCCAATATT CGTTTGATGC TCAACACTAC
ACAGACCTTA AATATTTTAC TGATTTTGTA TTACAAACCC ACGGCATTAA CACACTCAAT
GACGCGGCAA GCTCAGTGCA AACCGCAACG CCGTTGTCAG ACGCCGCCCG TAAGCAAGTG
CAGTTTGTTA GCCAGCTTTA TGCCAATAGC TTGTATCAGC AAGAGCAATA CGCGCAGGCA
GAAGAGGGTT ACATTTTAGC GCTGCAATAC ACAGACAAGA GCACAGACTC ATGGTCTGAA
ATGCGTAATC TGTTAGCTTC AAGCATTTAC TTCCAAGCGC AAGCCGTTAA ACAAACACAA
CCAGAGTTAG CCGTGAGTCA ATTATTACGA GTCGCTCAGG CAGTACCCGA ATCAAAATAT
GCGGTTAATG CCGAACTCGA CGCAGCAAAC TTATTGCTGG AACAACAGCG CTGGCAAGAA
GCGGTCGACG TATTAAAACC GTTTCAACAA CGTTATCCAA ACCATGAGTT TAGCGCGATT
ATTCCGGCCA AATTAACCCA GTCCTACGAA GCACTTGCCC AATGGGACTT GGCCGCCGAG
CAGCTTTTGA TCATTGTCAC CAATGAAAAG CCCGGCCCAC TAAAACGTGA AGCCTTGTAC
ACGGCAGCAG AATATTACTT AAAAGCAGGC GATAACAGTA ACGCACTCAG CACCTTTAGA
ACGTATGCAA AAACCTACCC ACAACCGTTT GATGTGGCAC AAGAAGTCCG CTTTAAAATG
AGTGAGTTTT ACCGCCAAAG CGGTGAAGCT AATAAGGAAT ATTACTGGTT TAGACAAATA
CTCAGCTTCG ATCGCAAACA ATTGCAGCAA GATGCGAATG CCATTCAGGC TCGTCAAATT
GAACTTGCCT CTATCGCGGC GTTTGCCTTG GGTGAAGCAG AACAACGCAG TTTTGCGGCA
ATTAAACTCA ACGCGCCTTT GCAGAAAAGC TTGATGCGCA AACAAGATGC GATGAAAAAA
GCCATTGGTT ATTATCAACA AGTGCTCGAT TTTCAATTGG CTAAATACGT ACCTCATGCG
ACATACAATC TTGCTGAAAT GTATCGCCAA CTTGCGGCCG ACATGATGAG CTCACAACGC
CCTGGCGATT TAGATGAATT AGCCTTGGAA GAGTACGAGA TTTTACTCGA AGAGCTGGCT
TATCCATTTG AAGAGAAAGC CATTGAAATT CACATCAGTA ATACCCAAAG AGCATGGGAT
GATATTGTTG ACCAATGGAT AGAACAAAGC TTTAAACGCT TGGCACAAAT GTCCCCTGCC
CTTTATCAAA AACAAGAACT CACTCATGAG GTCATCGATG CTATTCATTA A
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| Protein sequence | MSVSAYLSGA LILISGIALS GCFSSGQTEY AQQAKRTSLG DLANKRSSET VASVEMSKTQ
RSAKLANIYQ QLLTLEPDPE IRTHVEYRLA QINTESFEAQ SYADLDDESQ PDSQVLAQLT
QNDAALQKLV NEYQQLLQRY PQRSENEHIQ YQLAKALDLQ GKLDASLAEV ESLLRHYPQT
MYLAELNFRR GEIYYNLQNY SAAITAYQQV LTANDNQKYQ LNSLYMLGWS EFKLNRLANA
DKAFVQVFEA LVAGQQSNRD IANLTSDNFA FEKLGSRAQN LAIDTQRVLS ISLSQQLQSQ
SLVSLVKANQ SLPNINLYQH VLFANLAQFL LDKKLDYDAE LTYQAYIDLA SDNIWAARYS
LDLLDLYQRQ GKFAAMHQLK NDYVNQYGLS STFWVNANTA QQAELLPQLL SFSDEHSRRL
YADAQTQQGA QRISAFAQAA SALNTYLQLA KLPQASKLLT KDILNDEYLF ADANFEAKQY
QQALASYYAI AYDATATSAA LRKIQQQSAY ATTVTVREIL SQHGQSQQNQ NEQRNTDDYN
TLISQRNQLD KEFINQYPSD NRALQLASNA AQYSFDAQHY TDLKYFTDFV LQTHGINTLN
DAASSVQTAT PLSDAARKQV QFVSQLYANS LYQQEQYAQA EEGYILALQY TDKSTDSWSE
MRNLLASSIY FQAQAVKQTQ PELAVSQLLR VAQAVPESKY AVNAELDAAN LLLEQQRWQE
AVDVLKPFQQ RYPNHEFSAI IPAKLTQSYE ALAQWDLAAE QLLIIVTNEK PGPLKREALY
TAAEYYLKAG DNSNALSTFR TYAKTYPQPF DVAQEVRFKM SEFYRQSGEA NKEYYWFRQI
LSFDRKQLQQ DANAIQARQI ELASIAAFAL GEAEQRSFAA IKLNAPLQKS LMRKQDAMKK
AIGYYQQVLD FQLAKYVPHA TYNLAEMYRQ LAADMMSSQR PGDLDELALE EYEILLEELA
YPFEEKAIEI HISNTQRAWD DIVDQWIEQS FKRLAQMSPA LYQKQELTHE VIDAIH
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