| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1228 |
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| Symbol | |
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| ID | 4278478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1451662 |
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| End bp | 1452453 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638134003 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_749919 |
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| Protein GI | 114562406 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTATTCA TTAAATCATT ATTTACCTCA TCGACAGCGC AAGTGGCACT CTTCGCGCTA
GTAAGCCTCA TGCTGTTACC CGGTTGTAGT TCATCGCCAA GCAGTAATGA TGTGAATAAG
CAAACCGCTA AGGATCCAAG CCTAGATGGC ATGAATAAGG ACATTGTCGA CTTAGTTAGC
CTCGATACTA ACCGAGCCAA TAACAGCACC AGTATCAGTG CAAGCTCAAC AGATACTCAT
AATGTGTATC TTGAACAAGC CTCACAACGT TTAGCCGATG TGCCCGCATC GGTATTAAGT
CAATATCAGC AAGCTATTAG CCACATGAAA AACCAGCAAT GGCAAGCAGC GAATAGTTTG
TTTGATAAAG TGATTGCAGC CCAGCCTCAG TTGTCGGGCG CGTATGTGAA TAAAGCCATC
ATCGCGATGG ACCTGCAGCA ATTAGATCAA GCTGATGCAC TGCTTGTACA AGCGATAGCA
GTTAATAACA ACAATCCATA TGCGCATCAA ATAAAAGCCA ATATCGCAAG GCGACAAGGC
CAGTATGCTC AGGCCGAGCA AGGTTACTTA ACAGCGTTGA CACTGTGGCC ACAATACCCA
CAAGCGCAAT TAAATTTGGC GATATTATTA GAGTTATATC GTGGCAAGCT GCTGCAAGCA
CGCCAATACT ACCTGGCTTA TTTGGTTAAC CAACCAAATG ATGAACAAGC CAAGCGTTGG
CTCGCTGGCG TGGAAATTAA AATTCAACGC GCTGGGTTAA CATTACCCGA CAATGCTAAT
GGAGCAGGCT AA
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| Protein sequence | MLFIKSLFTS STAQVALFAL VSLMLLPGCS SSPSSNDVNK QTAKDPSLDG MNKDIVDLVS
LDTNRANNST SISASSTDTH NVYLEQASQR LADVPASVLS QYQQAISHMK NQQWQAANSL
FDKVIAAQPQ LSGAYVNKAI IAMDLQQLDQ ADALLVQAIA VNNNNPYAHQ IKANIARRQG
QYAQAEQGYL TALTLWPQYP QAQLNLAILL ELYRGKLLQA RQYYLAYLVN QPNDEQAKRW
LAGVEIKIQR AGLTLPDNAN GAG
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