| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1209 |
|---|
| Symbol | |
|---|
| ID | 4278023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 1418495 |
|---|
| End bp | 1419871 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638133984 |
|---|
| Product | Fmu (Sun) domain-containing protein |
|---|
| Protein accession | YP_749900 |
|---|
| Protein GI | 114562387 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.207524 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCATA ATATTCCCGC CATGTCTAAC GCATCCACAT CAGACGAGAC ACATGCGCAA
GAAATAGCTG CGACGACACC AGCACAAAAG CGAGCCCTAA GTTACTCAAC CACTATTGAG
ACTCTGTTTA ATCAGGTTAT GAGTACCAAC ATGCCTGCCG ATCGAATCAT TGGCCAATAT
TTTCGTGAAC ATAAAAAACA TGGGTCAAAA GATAGGCGAG TGATCCGCGA AAGTTTGTTT
GGTCTATTTC GCTGGTGGGG CTGGTTAAAC CAATTAAATT CAAGCCAAAA ACACACTACA
TGGTTTCAAC AGCTAAGCAC ATGCGCGATG TTGGAACAAC ATGAATGGAA TGACGTTGCT
ACTGCCTGGA ATGACTTCGC GAGTTGGCCT CAAACCCGCC CGGACCAAGT TGAACTGATA
AATAATGCTT CATTGAATGA CAAATTAACC GCCTTTATGA CGGTAAGTGG CATTGATACC
TGTCAACTAA CCCAGTTGTT GCCACAATGG TTTTGGCAAC TGTGTCCTAT AGATGATGTT
GATCAATATG CAGTTGTTAA TGCTATGAGC AGCCGCCCTC CGATCTGGGC TCGTGCACAA
ACATTATCAA CAGAAAAAGT GATCAAATCT CTTGGCCAAG CTGGTATTGA AGCAAAAGCG
AATAGTTACT TTTCAGATGC CATAAATTTA GGTCATAAGA GTATTAACTT AAATGAAGTT
AATGTTTATA AACAAGGTTA TCTTGAAATC CAAGATTTAG CTTCACAAGT TATTGGACAA
ATTTGTCAGC CAAATAACCA TGATAAATGG TGGGATGCTT GTAGTGGTGC TGGCGGCAAA
ACACTGCAAT TATATTCATT AATGTTACAG CAAGGCTCTG CCTTAACGGG CAGTATTATT
GCATCAGATA TTCGAACTAA ACCGTTAGAA GAGCTACGCA AGCGTGCCAA ACGTGCAGGT
TTTGATAATA TTAGTGTTGC ACCTTGGAAA GGCGACGTAT TGCCTGTAGA CGCGAATGCT
TTTGACGGAG TATTAGTCGA TGCTCCTTGT AGCTGCACAG GTACTTGGCG TAGAAACCCT
GATATGCGAT GGCTTGATGA TGCCAGTGCA GTAACAGATA AACCGATGCT ACAATTAGCC
ATTTTAAGAC GTAGCGCAGT GGCGGTAAAA TCAGGCGGTA AATTGGTTTA TGCAACTTGC
TCTTTATCAC CTAGTGAAAA TGAACAAATT GTAAAAGACT TTTTATCTGA AACAGCCGAG
TTTGAACTTG AACCGGTCAC GCATCCTTTT ACAGGGCAAC TATGTGATAT GCTGACAATT
TGGCCTCAGC AAGCTAACAG TGATGGCATG TTTGTCGCAA AAATGCGCCG TAAGTAG
|
|---|
| Protein sequence | MSHNIPAMSN ASTSDETHAQ EIAATTPAQK RALSYSTTIE TLFNQVMSTN MPADRIIGQY
FREHKKHGSK DRRVIRESLF GLFRWWGWLN QLNSSQKHTT WFQQLSTCAM LEQHEWNDVA
TAWNDFASWP QTRPDQVELI NNASLNDKLT AFMTVSGIDT CQLTQLLPQW FWQLCPIDDV
DQYAVVNAMS SRPPIWARAQ TLSTEKVIKS LGQAGIEAKA NSYFSDAINL GHKSINLNEV
NVYKQGYLEI QDLASQVIGQ ICQPNNHDKW WDACSGAGGK TLQLYSLMLQ QGSALTGSII
ASDIRTKPLE ELRKRAKRAG FDNISVAPWK GDVLPVDANA FDGVLVDAPC SCTGTWRRNP
DMRWLDDASA VTDKPMLQLA ILRRSAVAVK SGGKLVYATC SLSPSENEQI VKDFLSETAE
FELEPVTHPF TGQLCDMLTI WPQQANSDGM FVAKMRRK
|
|---|
| |