| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1199 |
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| Symbol | fliA |
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| ID | 4277068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1409704 |
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| End bp | 1410423 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638133974 |
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| Product | flagellar biosynthesis sigma factor |
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| Protein accession | YP_749890 |
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| Protein GI | 114562377 |
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| COG category | [K] Transcription |
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| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
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| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000316929 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAATAAAG CCGCAGCGTA TACTCAGTTC GATAACAAAA CGTCTATTGT TGAACAGTAT
GCACCGTTGG TAAAAAGAAT TGCTCATCAT ATGCTGGCAA GATTACCAGC ATCGGTGCAA
CTTGATGATT TATTACAAGC AGGGATGATG GGGTTACTTG AGGCCTCTTC TAAATTTGAT
AATAGTAAAG GGGCTAAGTT TGAAACCTTT GCTGGCATCA GAATTCGTGG TGCAATGATT
GATGAAATTC GCCGTGGTGA CTGGGTTCCG CGCTCAGTTC ATCGTAATAA TCGTCTAGTA
GCACATGCAA TTGATGAATT GGGGCAACTG CTTGGAAGAG ATGCCAACGA TACAGAAATT
GCTGAAAAAC TTGATATGTC GCTCGATGAG TACCATCATA TCTTAAATGA TGTTTCTGTT
GGTAAAATCA TAGGCATAGA AGATCTTGGT GTTTCGCAAG ATGTGTTAAT CACAGATAAC
GAATCACCAG ATGAAACCTT TGACTCGCTT GCTGAAATTC AATTCCAATC TGCATTGGTT
GAAGCAATTA AGACATTGCC AGAAAGAGAT GCATTAGTGT TGTCGTTATA TTACGACGAA
GCATTAAATT TAAAAGAAAT CGGTGCCATC CTTGAAGTTA GCGAATCGCG AGTAAGCCAG
ATATTAAGTC AGGCAATGCT CAGATTAAAA GCGAAGCTCA AGCATTGGAC ACAAGAATAA
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| Protein sequence | MNKAAAYTQF DNKTSIVEQY APLVKRIAHH MLARLPASVQ LDDLLQAGMM GLLEASSKFD
NSKGAKFETF AGIRIRGAMI DEIRRGDWVP RSVHRNNRLV AHAIDELGQL LGRDANDTEI
AEKLDMSLDE YHHILNDVSV GKIIGIEDLG VSQDVLITDN ESPDETFDSL AEIQFQSALV
EAIKTLPERD ALVLSLYYDE ALNLKEIGAI LEVSESRVSQ ILSQAMLRLK AKLKHWTQE
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