Gene Sfri_1149 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1149 
Symbol 
ID4277858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp1358846 
End bp1359526 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content39% 
IMG OID638133923 
Producttranscriptional regulator, TetR family protein 
Protein accessionYP_749840 
Protein GI114562327 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTAATG GGTTAATTTA CGGAACCAAC ATGACAAAAA AAAACACATC GCTTAATAAT 
ATCGAACAGA TTAGTTTGAG CCGCAGTGAA CAAAAGCGTG CTCAAGTACT TGAGTCTGCG 
ATTGACCTTT TTTGTCATCA GGGTTTTCCT AATACCAGCA TGGATGAAGT AGCAAAACAT 
GCCGGAGTAT CAAAACAAAC TGTTTACTCT CACTTTGGCT CCAAAGATGA TTTGTTTGTA 
TCTGCGATTG AGTCTAAATG TGTTGTACAT CAACTCACTG GCGATGCCTT AATTGATGCA 
GCAAATCCAC AACGGGTTAT TTTGCAGTTT GCTCTGCAAT TTGGTGAAAT GATTGTTAGC 
AAAGAAACCA TGACTGTATT TAAAACTTGC GTAGCTCAAG CTGACACTCA CCCAGAAGTG 
TCTAGATTGT TTTATGACGC AGGCCCCAAG CACGTACTCG GACTGATTAG AAATTACTTA 
AAAAAGGTCA ATGAGCATGG CGAATACTTT TTTGAAAATC CACATGAAAG CGCAGTTAGA 
CTATGTTTAA TGTTATTTGG CGAACTAAAA TTACGTCTAG AGTTAGGCTT AGAAATAGGT 
GATTTGCTGA CAACCAGACA ACAATACTTA CAAGATACTG CCGGGATGTT TTTGCGAGCC 
CACCAAGTTG ACGTAAAATA A
 
Protein sequence
MLNGLIYGTN MTKKNTSLNN IEQISLSRSE QKRAQVLESA IDLFCHQGFP NTSMDEVAKH 
AGVSKQTVYS HFGSKDDLFV SAIESKCVVH QLTGDALIDA ANPQRVILQF ALQFGEMIVS 
KETMTVFKTC VAQADTHPEV SRLFYDAGPK HVLGLIRNYL KKVNEHGEYF FENPHESAVR 
LCLMLFGELK LRLELGLEIG DLLTTRQQYL QDTAGMFLRA HQVDVK