| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1148 |
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| Symbol | |
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| ID | 4277857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1357510 |
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| End bp | 1358631 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133922 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_749839 |
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| Protein GI | 114562326 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTACGCGT CAAAGACATT CACCCCAATC ATTCGATACT GGGCGCTAGG TTTAAGCTTA
ATCGCATTAG GCGGTTGTGG CTCTGAGGTA AAAGAGCATT CACAAACAAC TGAGTATCAA
ACGGTATTGT CACAACCTTT ATCGTTAAGC GACCGTTATC AGCACATGCA AACTTATACG
GGTACGATTC GCTCAGCCAA TACCACCGGA ATTGGTTTTG AGCTTGCGGG TAAACTCAAT
AATATCCTGG TTGATAGTGG CGATACGGTG AGTAAAGGGC AAATATTAGC GCAGCTGGAT
ACCGATTTAT TAACTGCAGA AAAGCAGCAA TTACAAGCCA GTTTATTACA AACTCAAGCG
GATATAGATT TAGCAAAAAG CACCTTAGTC CGTACTCAAA AATTGAAACA ACAAAACTAT
GTGTCTGAAC AGCAACTCGA TGAAACCCAA CAACAAGTTA TCAGCTTACA AGCTAACCAA
AAGCGTATAG AAGCCAGCTT AAGTGCGACC AATTTGAAAA TTGAAAAATC AACTTTACTG
GCCCCATTCA ATGGAAAAAT CAGTCAACGT TTTCATAATG TCGGTGAAGT GATTGCGCTA
GGCAGTCCGG TTTTCACCTT AGTCGGTAAC AGTCAGCCTT TGGCTTACAT AGGTGTACCC
ATAGACATCG CACAGCAGTT AACCGCCGAG CAGATGGTAG ATGTCCGTGT AGGTAAACAA
ACCTTTACCG CTAAAATTGC CGGTATTAGT GCCGAGATCA ATACCGTTAG TCGTACGGTT
CAGTTGCGTA TTCATTTGCC TGACTCAGCC AGAGTGATTA ATGGCGAAAT AGCTTATTTG
GCGTATCAAC AAGACGTACT AGCACCTGGT TATTGGGTGC CTATGTCAGC ATTAACCGAT
GGTGTGCGCG GATTATGGAA CGTGTTGGCC TTAGTTGAGG CTGAGCAAGG TTTTTATACC
ATTGAACGTC GCGATGTAGA GATTATCTAT ACCAATGAGC AACAAGCGTA TATTCAAGGC
GCCATAAAAC CAAGCGATTT AATTGTGTCA AAAGGATTAC ATAAATTGGT GGTTAATCAG
AAGGTCACTC TCGCTCAATC AGAGAAAATG GGGGCATTAT GA
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| Protein sequence | MYASKTFTPI IRYWALGLSL IALGGCGSEV KEHSQTTEYQ TVLSQPLSLS DRYQHMQTYT
GTIRSANTTG IGFELAGKLN NILVDSGDTV SKGQILAQLD TDLLTAEKQQ LQASLLQTQA
DIDLAKSTLV RTQKLKQQNY VSEQQLDETQ QQVISLQANQ KRIEASLSAT NLKIEKSTLL
APFNGKISQR FHNVGEVIAL GSPVFTLVGN SQPLAYIGVP IDIAQQLTAE QMVDVRVGKQ
TFTAKIAGIS AEINTVSRTV QLRIHLPDSA RVINGEIAYL AYQQDVLAPG YWVPMSALTD
GVRGLWNVLA LVEAEQGFYT IERRDVEIIY TNEQQAYIQG AIKPSDLIVS KGLHKLVVNQ
KVTLAQSEKM GAL
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