| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1029 |
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| Symbol | |
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| ID | 4277843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1209954 |
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| End bp | 1213058 |
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| Gene Length | 3105 bp |
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| Protein Length | 1034 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133797 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_749720 |
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| Protein GI | 114562207 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.2741 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGCTAA GTGATACGGC GGTAAAGCGC CCTGTAGTTG CGATTGTCTT GAGTTTATTA
CTGTGTGTTT TTGGCTTGGT ATCGTTTTCT AAATTGTCAG TTAGAGAAAT GCCCGATGTA
CAAAACCCAG TCGTGACAGT AATGACCACT TATAGCGGTG CATCAGCCAC TATTATGGAA
AGTAAAATCA CTAAGAGCCT TGAAGATGAA TTAACTGGCA TCAGCGGTAT TGATGAAATC
ACCTCAACCA CTCGAAATGG CATGTCACGT ATTTCCATCG AGTTTGAACT AGGATGGGAT
TTAACCGAAG GCGTGAGTGA TGTACGAGAT GCAGTTGCCA AAGCACAACG TCGCTTGCCT
GATGAAGCTG ACGATCCAAT TGTATCTAAA GATAATGGCA CTGGTGAACC GTCGATTTAC
GTCAACTTGA GCTCTGAAAA TATGGACCGT ACTCAACTCA CTGATTACGC CCAGCGGGTA
TTGGAAGACA GATTTAGCTT AATTACTGGT GTGAGCTCAG TTAATATTTC TGGTGGCTTG
TACAAAGTCA TGTATGTACA ACTAAAACCG CAATTAATGG CCGGTAGAAA TGTAACTACC
AACGACATTA TTAGTGCCTT AAATACCGAA AATCTTGAAA CACCCGGTGG CGAAGTCCGT
AACGACACCA CCGTCATGTC TGTTAGAACA AAACGTCTAT ATTACAGCCC AGAAGACTTC
AACTATTTAG TTGTCCACAC CGCTGACGAT GGTACGCCTA TATATCTTAA AGATGTCGCT
AGCGTATTCA TCGGTGCAGA AAACGAAAAC TCGACCTTTA AAAGCAACGG CATCGTTAAC
TTAAGCTTAG GTATAGTGCC GCAATCTGAT GCCAATCCAT TAGACATATC ACTGCAAGTA
CAACAAGAAG TCGATAAGGT GCAGAGTTTT CTGCCAAAAG GAACGCAGCT GGTTGTCGAT
TATGATGCCA ATGTGTTTAT TGCGCGCTCG ATTAATGAGG TTTACAACAC CCTATTTATT
ACTGGGGTAC TGGTTATTCT TGTGCTGTAC ATTTTTATCG GTCAAGTACG GGCAACCCTT
ATTCCAGCAG TAACAGTACC AGTATCGTTA ATTGCCGCAT TCATGGCGGC ATATAGCTTA
GGTTACTCCA TTAACTTATT AACCTTAATG GCGCTTATTT TAGCCATTGG CCTAGTGGTT
GATGACGCCA TCGTTGTGGT TGAGAATATC TTCCACCATA TTGAACAAGG TGAACAACCG
ATACTTGCTG CGTATAAAGG GACCCGCGAA GTGGGTTTTG CTGTGATCTC AACAACCTTA
GTACTGGTAA TGGTATTTTT ACCTATTTCA TTTATGGATG GCATGGTCGG GTTATTGTTT
ACAGAGTTCT CCGTGATGTT GGCAATGTCG GTGCTGTTTT CATCCCTTAT CGCCCTTACA
CTTACCCCAG TGATGAGCAG TAAACTATTA AAGGCCAATG TGAAGAAAAA TCGTTTTAAT
ATCGCTATCG ATAATGGCTT TAATCGTTTA GAGCAACGTT ATCGTAGTAT GGTCAAATGG
GCATTGCACT GGCGCATAGC AGCACCATTC ATAATTATTG CCTGCATCGG TGGTAGCTAC
TTACTCATGC AACAAGTTCC CTCACAACTC TCACCACAAG AAGATCGCGG AGTATTATTT
GCGTTTATTA AAGGCGCCGA AGGCACCAGT TATAATCGCA TGATTGCCAA TATGGACATC
GTTGAAAACC GATTAATGCC ACTATTGGGT CAAGGAGTAG TGAAATCATT TAGTATTGAA
GCACCAGCAT TTGGCGGGAG AGCGGGAGAT CAAACCGGGT TTGCGATTAT CCAGTTAGAA
GACTGGCAAG ATCGTGATAC CGATATTAAA CAAGCGTTGG CGTTAATCAG CCAAACGTTA
AAAGACATTC CCGATGTCAT GGTACGGCCA ATGTTGCCAG GATTTAGAGG CCAATCAAGT
GAACCGGTTC AATTTGTACT TGGCGGCTCT GACTATGCTG AGTTATTTAA ATGGGCCCAA
GTACTGCAAC AAGAAGCCGA TGCAAGCCCT ATGCTGGACG GGGCTGATTT AGATTACGCA
GAGACCACAC CAGAACTTGT TGTTACGGTA GACAAGCAAC GAGCTGCAGA GTTAGGGATT
AGCGTTTCAG AAATAGCGAC AACCTTAGAA ATCATGTTGG GCGGCCGCAG TGAAACAACC
TTTGTTGAGC GTGGCGAAGA ATATGATGTA TACCTTCGCG GTGATGAAAA CAGCTTTAAC
AGCGTCACAG ACCTCAGTAA GATTTACTTT AGAAGCAGCA AAGGCGAGCT TATCACCCTT
GATACTGTCA CCAAAGTTGA AGAAGTCGCT TCACCACAGC GATTAAGCCA TACCAACAAG
CAGAAATCGA TCACCATCAA AGCAAATTTA GGCGAAGGTT ATACCCTAGG CGAAGCCCTC
GACTTTTTAG AACAACGCGC AATAACTTTA CTGCCAAACG ATATTTCAAT TGCCTACACG
GGTGAGTCAA AAGACTTTAA AGAAAACCAA GCGGGAGTGC TCATTGTATT TGCTTTAGCA
CTGCTGATTG CTTATCTGGT ATTAGCGGCT CAATTTGAAA GTTTTATCAA TCCTGCAGTG
GTGATGTTTA CTGTTCCAAT GGGTATTTTT GGTGGTTTTA TTGGTTTAGT TCTAATGCAT
CAAGGGATGA ATATCTATAG CCAAATTGGC ATGATCATGT TAATTGGTAT GGTAACTAAA
AATGGTATTT TAATCGTTGA GTTTGCGAAC CAACTACGTG ACCGAGGCTT ATCGCTCGAC
AACGCTATTA TTGACGCATC AGCTCGTCGC TTAAGACCCA TTTTAATGAC AGCCTTTACC
ACGCTTATTG GTGCAATACC ATTAATAGTA TCTACCGGCG CGGGGAGTGA AAGCCGCATT
GCAGTTGGAA CTGTGATATT CTTCGGCATG GCATTTGCGA CGGTTGTCAC CCTATTGGTT
ATCCCCGCAA TGTACCGACT TATTTCTTCG TCAACCCACT CTCCAGGGTT TGTTGAAGCA
CAACTTAATG ACGCCATTGC TGCTCAAAAA GCGCAACAGC CTTAA
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| Protein sequence | MWLSDTAVKR PVVAIVLSLL LCVFGLVSFS KLSVREMPDV QNPVVTVMTT YSGASATIME
SKITKSLEDE LTGISGIDEI TSTTRNGMSR ISIEFELGWD LTEGVSDVRD AVAKAQRRLP
DEADDPIVSK DNGTGEPSIY VNLSSENMDR TQLTDYAQRV LEDRFSLITG VSSVNISGGL
YKVMYVQLKP QLMAGRNVTT NDIISALNTE NLETPGGEVR NDTTVMSVRT KRLYYSPEDF
NYLVVHTADD GTPIYLKDVA SVFIGAENEN STFKSNGIVN LSLGIVPQSD ANPLDISLQV
QQEVDKVQSF LPKGTQLVVD YDANVFIARS INEVYNTLFI TGVLVILVLY IFIGQVRATL
IPAVTVPVSL IAAFMAAYSL GYSINLLTLM ALILAIGLVV DDAIVVVENI FHHIEQGEQP
ILAAYKGTRE VGFAVISTTL VLVMVFLPIS FMDGMVGLLF TEFSVMLAMS VLFSSLIALT
LTPVMSSKLL KANVKKNRFN IAIDNGFNRL EQRYRSMVKW ALHWRIAAPF IIIACIGGSY
LLMQQVPSQL SPQEDRGVLF AFIKGAEGTS YNRMIANMDI VENRLMPLLG QGVVKSFSIE
APAFGGRAGD QTGFAIIQLE DWQDRDTDIK QALALISQTL KDIPDVMVRP MLPGFRGQSS
EPVQFVLGGS DYAELFKWAQ VLQQEADASP MLDGADLDYA ETTPELVVTV DKQRAAELGI
SVSEIATTLE IMLGGRSETT FVERGEEYDV YLRGDENSFN SVTDLSKIYF RSSKGELITL
DTVTKVEEVA SPQRLSHTNK QKSITIKANL GEGYTLGEAL DFLEQRAITL LPNDISIAYT
GESKDFKENQ AGVLIVFALA LLIAYLVLAA QFESFINPAV VMFTVPMGIF GGFIGLVLMH
QGMNIYSQIG MIMLIGMVTK NGILIVEFAN QLRDRGLSLD NAIIDASARR LRPILMTAFT
TLIGAIPLIV STGAGSESRI AVGTVIFFGM AFATVVTLLV IPAMYRLISS STHSPGFVEA
QLNDAIAAQK AQQP
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