Gene Sfri_1007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1007 
Symbol 
ID4278381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp1178016 
End bp1179002 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content41% 
IMG OID638133775 
Productphosphoserine phosphatase SerB 
Protein accessionYP_749698 
Protein GI114562185 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0560] Phosphoserine phosphatase 
TIGRFAM ID[TIGR00338] phosphoserine phosphatase SerB
[TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTGAAC AACGTGATAA TGTTTTACTA AATTTTTTAT TTTCAGATAC TTGTGAGACA 
TATCAACATT TAGGCTGTGT GTTATATCGT TATCAAGAGT CAGATTACTT ACTTAACTTA 
CAATCTCATC TACCGTATCG TTGTCGAGTT ATTTTTAGTG CGCAATGCTC TGCAGAGATA 
GAAGCCTGGT TATCTTCCAT ATCTATCGAT ACTCATATCG CAAAGCTTGA CAGGCAAAAC 
GATTTATTAG GTTTTGAACT GTCGGCTCAA ACCGCTAATG ATGTATTAAT GGCGTCATTC 
CCAACAAATA TAGCTGCTGA AATAGTGCTT ATTCAACAAC CATTAGCTCG CCTCAATCAA 
CCGGGGTTAT TGGTGATGGA TATGGATTCT ACTGCTATTC AAATTGAATG TATTGACGAA 
CTCGCTGCTA TGGCTGGTGT GGGTGAGGAA GTTGCCGCAG TTACGGCAAG TGCTATGCGT 
GGCGAATTAG ATTTTGAACA GTCTTTAAGA CAACGAGTTA GTAAGCTTAC CGGTGCTGAT 
GCCGCTATTA TTCAGCAGTT GTGCGACAAC TTGCCGTTAA TGTCTGGTCT TGAAGTAATG 
TTAGCCGAGT TAAAAACACA TCAATGGAAA CTGGTTGTCG CTTCTGGTGG GTTTACGCCA 
TTTGTCGGTC ATTTAAAAAC ATTGCTTAAT CTTGATGCGG CATTTGCCAA TGAGTTAGTT 
ATTGTTGATG GCAAGCTGAG TGGTGAAGTA ACAGGTGAAG TGGTCGATGC TCAATATAAG 
GCTAACGTGA TTAGTCTGTG TGCGGAACAG TGGGCTATTC CATCTGGTCA GCGAGTTGCC 
ATTGGTGACG GCGCCAATGA TATTCCGATG ATCCAAGCCG CCGATTTAGG ATTAGCATTT 
CATGCTAAGC CTAAATTAGT TGCTGCTGCA GATGCATCAA TCCAAAATGT TGATTTACGT 
GCATTAGTCT TTTGTCTACA ACTGTAA
 
Protein sequence
MLEQRDNVLL NFLFSDTCET YQHLGCVLYR YQESDYLLNL QSHLPYRCRV IFSAQCSAEI 
EAWLSSISID THIAKLDRQN DLLGFELSAQ TANDVLMASF PTNIAAEIVL IQQPLARLNQ 
PGLLVMDMDS TAIQIECIDE LAAMAGVGEE VAAVTASAMR GELDFEQSLR QRVSKLTGAD 
AAIIQQLCDN LPLMSGLEVM LAELKTHQWK LVVASGGFTP FVGHLKTLLN LDAAFANELV 
IVDGKLSGEV TGEVVDAQYK ANVISLCAEQ WAIPSGQRVA IGDGANDIPM IQAADLGLAF 
HAKPKLVAAA DASIQNVDLR ALVFCLQL