| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0922 |
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| Symbol | |
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| ID | 4277335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1085101 |
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| End bp | 1086384 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638133688 |
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| Product | inner membrane transport protein YdhC |
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| Protein accession | YP_749613 |
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| Protein GI | 114562100 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAATT TGAACAATAA CAATATATTA ATCAACAAAA AACAAACAAA TATAACATTC
TATTTGTTTC TGTTTTATTT AGCCTTACTG AGTATGTTAG GTTTTGTAGC TACCGACATG
TACCTGCCAT CATTCAAATC TATTGAAGGG ACTTTTAATG CAAACACTTC AGAAGTGGCC
ATATCGTTAA CCAGCTTTTT AGCTGGCCTC GCTATCGGAC AGTTATTGTA TGGGCCATTA
GTACATAAAA TAGGTAAGCG AAACTCACTG TTTGTTGGTT TAAGCCTGTT TATGCTGGCA
AGTGCATTGA TTGCGAACAG TGACAGTATT CTGATGATGA ATATTGCTCG TTTCTTCCAA
GCGATTGGTG CTTGCAGTGC AGCCGTTATT TGGCAAGCGA TTGTGATTGA GCAATACCCA
GCCGATAAAG CTCAAAATAT TTTCTCTAAT ATTATGCCTT TAGTGGCATT GTCTCCGGCA
TTAGCGCCCA TTGCTGGCGC AATGATACTG AATAGTTTTG GCTGGCGCGC GGTGTTTATT
AGCTTATGTA TCATTGCAGT ATTACTCATT GCCATGACGT ATTTTTTTGT GCCTAAAGAA
CAAGTGAGCG TTCACAAAAG CAAAACTCAT ATCCGCTATA AACAACTGCT TTCCAATACG
CGATATTTAG GCAATGTGGT TATTTTTGGT GCGTGTTCAG GCGCTTTTTT TGCTTACTTA
ACGTTGTGGC CTGCTGTCAT GGAACAGTAT GGTTACGCCG CGACAGAAAT TGGCTTAAGT
TTTATTCCCC AAACCATCAT GTTTATTGTT GGTGGCTACT CAAGTAAATT ACTGATCCGC
AAATTTGGCA CCAAAATCAG CCTAAACTGT TTACTGATAT TGTTTGGTTT ATGTGTTGCT
GCCATTTTTA CCTCCAGTGT GATCCTCAAT ACTGAAACAA TATTGCCACT GCTCATTGCA
TTCTCTTTGC TAGCAGGAAG CAATGGCGCG ATTTATCCTA TTGTGGTCAA TAATGCTCTG
CAAGAGTTCA GCAATAACGC GGCCAAAGCT GCAGGACTAC AAAATTTTTT GCAGATTACT
ATCTCTTTTG GGGCATCAAG TCTGGTGGCC ATTTGGGCAA GTGCGGGTGA TAACGCCATT
GGTTGGGGAA TACTGGCCTG TTCAGTATTG GTTGCCGTTG GCCACGTGAT AAAAAGTCAT
GATTCTTGGG CACAAATAAA TCAGTATTTT ACTTTTCCTG ATCCAGCAAG GTTATCTAAA
GCCTTCACTA AACATGATCA ATAA
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| Protein sequence | MPNLNNNNIL INKKQTNITF YLFLFYLALL SMLGFVATDM YLPSFKSIEG TFNANTSEVA
ISLTSFLAGL AIGQLLYGPL VHKIGKRNSL FVGLSLFMLA SALIANSDSI LMMNIARFFQ
AIGACSAAVI WQAIVIEQYP ADKAQNIFSN IMPLVALSPA LAPIAGAMIL NSFGWRAVFI
SLCIIAVLLI AMTYFFVPKE QVSVHKSKTH IRYKQLLSNT RYLGNVVIFG ACSGAFFAYL
TLWPAVMEQY GYAATEIGLS FIPQTIMFIV GGYSSKLLIR KFGTKISLNC LLILFGLCVA
AIFTSSVILN TETILPLLIA FSLLAGSNGA IYPIVVNNAL QEFSNNAAKA AGLQNFLQIT
ISFGASSLVA IWASAGDNAI GWGILACSVL VAVGHVIKSH DSWAQINQYF TFPDPARLSK
AFTKHDQ
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