| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0908 |
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| Symbol | |
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| ID | 4278612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1067012 |
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| End bp | 1067632 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133674 |
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| Product | uracil-DNA glycosylase superfamily protein |
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| Protein accession | YP_749599 |
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| Protein GI | 114562086 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1573] Uracil-DNA glycosylase |
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| TIGRFAM ID | [TIGR00758] uracil-DNA glycosylase, family 4 |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.22302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATTTTAT ATACAAAAAG TAAGGCATTG GATATGGTTT CGTTACTCAC TCAAGTAAAA
AATTGTCAGC TTTGTGCATC ATGTCTAGTT GATGGTGTAC GCCCAGTAGT ACAAATTGAT
CCGCAAGCAA AAGTGTTGAT CATCGGTCAG GCCCCTGGAC GTAAAGTACA TTTGTCGGGT
ATTCCATTCG ATGACGCCAG TGGCGACCGA TTGCGGTTGT GGCTAGGGGT AACTAAAGAC
GTTTTTTACG ATGCTAAACA GATTGCTATT ATGCCGATGG GTTTTTGTTA TCCGGGTAGT
TATGCCGCTT CTGGTAAAGG AAAGTCTGGC GACTTACCTC CGCGGCCTGA ATGTGCGCCT
AAATGGCATG ATTTATTGCT GCAGCAGTTA GTTAACGTCA AGTTGATATT ATTGGTAGGG
CAATATGCAC AACAGTATTA TTTAGCCGAT AAGCCGAAAA CATTAACCGA AACTGTGCAG
CAATGGCGCA GGTTTGGGCC ACGTTATATT CCTCTGCCGC ATCCCAGTCC GCGTAATAAT
ATTTGGCTTA GTCGTAACCC ATGGTTTGAA GATGAGTTAC TTAGCGACAT TAGTCTTCGT
GTTGCGAATG CATTAGCCTA G
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| Protein sequence | MILYTKSKAL DMVSLLTQVK NCQLCASCLV DGVRPVVQID PQAKVLIIGQ APGRKVHLSG
IPFDDASGDR LRLWLGVTKD VFYDAKQIAI MPMGFCYPGS YAASGKGKSG DLPPRPECAP
KWHDLLLQQL VNVKLILLVG QYAQQYYLAD KPKTLTETVQ QWRRFGPRYI PLPHPSPRNN
IWLSRNPWFE DELLSDISLR VANALA
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