| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0897 |
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| Symbol | |
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| ID | 4276994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1055324 |
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| End bp | 1056583 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638133663 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_749588 |
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| Protein GI | 114562075 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAAAG ACACAAGTAG CCAAGATACT GTTATTGCGC CTAAGTTAGG CCGTAAATTG
CGCTTACCCT TGATGATAGG TTGCGGTGCA ATTTTGATGA GCGCGTTGGT GTGGGCGAGT
TTAAGTCGTG ACAGTAATCA ACGTTCGGTT GATGGTGCAG ATTTACGTTT GGCAACCTTA
ACCCGTGGCA CGTTGGTGCG TGATATTGCC ACTACCGGTA AAATTGTGGC GGCCAATGCG
CCCATTTTAT ATAGCACGGA AGAAGGTGTG GTGACGCTAT TAAGTCAACC TGGTGATGAA
GTTGAGCTGG GGCAAGTGGT GGCCAAGATT GAAAGCCCGC GTTTACAAAG TGAATTGCAA
CAACAGCAGT CGATGCTTGA AGGGATGCAA GGTAGTTTAG AGCGCGCCAA GTTAGATGCA
CGCCGTGAGC AATTGCGCGT TAGCCAGATT TTAGACATGG CGAAAGTCGA TTTAGAAGCC
GCAGATCGTG AAAGCCGTCG TGGTGATCAA TTGATTGAGT CGAGTTTGAT CAGCAAAATC
GATTTTGAAA AAAGCAAAGA TGATTTACAT AAAGCCAAAT TATTGCATAA GCATGCCCAG
CAAGAAGTGG AGCTTATGCG CGATACCCTC AGTTTTGAAA TTAAAAACCG TACCCTTGAA
GTACAACGCC AGGCTCTAGT GGTGAGAGAG TTAACTCGTC AAGCCAATGC CTTGAGTATT
ATCGCGCCAG TTAGCGGCAT TATTGGTAAC TGGTTGGTGG AGCAAAAAGC CCGTATTGCC
GCCAGCCAAC CAATATTAAC TGTGGTCGAT TTATCTGCTT TTGAAGCTGA GTTAGCTGTG
CCAGAGTCTT ATGCTGATGA GTTAGGTTTA GGGATGGATG TTGAGTTGAG TTTTGGCAAC
GTTAATGTGG TTGGCCAATT GTCGTCAATT TCACCCGAAG TACGTAATCG TGAAGTGACC
GCCCGGGTGC GTTTTGCTGA CAGTAACACT TTATCGTTAC GTCAAAATCA GCGTTTGTCT
GCCCGAGTAT TACTGGAAAA CAGACCCAAC GTGTTGATAG TGAAACGCGG TGATTTTCTC
AATATGGGCG GCGAAGTGGC GTATCAAGTG AGTGACGCTG TTGCTCATAA GAAAGTCGTT
AAATTGGGCG CACGCAGTAT GAGCCAAGTT GAAGTGCTTG AAGGCGGTGA AGCCGGTGAC
GTATGGGTGA TATCTGGTAC CGAAACCTTT AAAAATGATC CAACAATTCA AATCCGATAG
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| Protein sequence | MIKDTSSQDT VIAPKLGRKL RLPLMIGCGA ILMSALVWAS LSRDSNQRSV DGADLRLATL
TRGTLVRDIA TTGKIVAANA PILYSTEEGV VTLLSQPGDE VELGQVVAKI ESPRLQSELQ
QQQSMLEGMQ GSLERAKLDA RREQLRVSQI LDMAKVDLEA ADRESRRGDQ LIESSLISKI
DFEKSKDDLH KAKLLHKHAQ QEVELMRDTL SFEIKNRTLE VQRQALVVRE LTRQANALSI
IAPVSGIIGN WLVEQKARIA ASQPILTVVD LSAFEAELAV PESYADELGL GMDVELSFGN
VNVVGQLSSI SPEVRNREVT ARVRFADSNT LSLRQNQRLS ARVLLENRPN VLIVKRGDFL
NMGGEVAYQV SDAVAHKKVV KLGARSMSQV EVLEGGEAGD VWVISGTETF KNDPTIQIR
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