| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0881 |
|---|
| Symbol | |
|---|
| ID | 4278638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 1035945 |
|---|
| End bp | 1036754 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638133647 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_749572 |
|---|
| Protein GI | 114562059 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCGTT ACTTATCTGT GGTGATTTTG GTCATTACAT TTTTCAGTTC GCCGGTTTCA
AATGCTAGAC CCGCCGTCAC TTTTTACACT GAAAGCTATC CTCCATTTCA GTCGCTAAAT
CCCCAAGGAG AGTTGGTTGG ATTTTCGATT GATGTGTTAC ATGCTACCCA GCAATACCTC
GATTTTGATA TCAATATTCA AATCATGCCT TGGAATCGGG CATATAAAAA TGCAGCAAAA
AATCCTGATA CCTTTATTTT TTCAATCGGT AAATCCGAAA AACGTTTACA GCAGTTTAAG
TGGGTAATCG ATTTTTATAC GGTGCAAAAT GCTATTTACA AAAAAGCTTC TCGATCTGAC
ATCAATATTG ATAGCAAAGA AGATATTAAT CGTTACACGC TAGCATTGCC TAGAGGTGAC
ATTTCACTCG ACAGCCTAAA TATTCAACAT AAACACCCAA ATGTATATTT AGTTTCAAAT
CAAACAAAAG CACTGAAAAT GCTTTATTTT GAACGCGTGG ATTTAATTAA TAATAATAAT
ATCGGTCTAT CCGGTTCGGT AAAAGCACTT GGGCTTAAAC AGTCTGATTT CACAGTGGCG
TATGTTTATA ATAATGTCGA ACTAGGTCTA GCAACCCATA AAGAGACTCG GATTGAGTTA
CTGGAAATGA TGCAACATGC ATTTGATACA ATTAAACAAA ATGGTCAGTT CGAGCTTCTG
GTAAAAAAAT GGTTTCCTGA GCCCGTATCG CAACAAACAG CAACTCAGGA AGTGAGCCCA
ATAACAACTA AGCCTGATAA ATCATCGTAA
|
|---|
| Protein sequence | MLRYLSVVIL VITFFSSPVS NARPAVTFYT ESYPPFQSLN PQGELVGFSI DVLHATQQYL
DFDINIQIMP WNRAYKNAAK NPDTFIFSIG KSEKRLQQFK WVIDFYTVQN AIYKKASRSD
INIDSKEDIN RYTLALPRGD ISLDSLNIQH KHPNVYLVSN QTKALKMLYF ERVDLINNNN
IGLSGSVKAL GLKQSDFTVA YVYNNVELGL ATHKETRIEL LEMMQHAFDT IKQNGQFELL
VKKWFPEPVS QQTATQEVSP ITTKPDKSS
|
|---|
| |