Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0849 |
Symbol | |
ID | 4276946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 997363 |
End bp | 998175 |
Gene Length | 813 bp |
Protein Length | 270 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638133615 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_749540 |
Protein GI | 114562027 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.925309 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAGATT CACGTAAAGC ATTACAAGCA TTTTTAGATA TTATTTCGTT TGATCGAATA ATCAGTATTT TACTGCTGTG TCTAATGGCG TGGCTGTTAT TGGTATTGAT CCAATTTTGC TTAAATCAAC TGAATAAAGC GTTGCCTAAA TACCGCTTAA TTTGGAATCG GTCATACCCT TTTGTGCGTT TATTTGTATG GCTTAGTGTG ATTGTTTATT CGATCGTTGG CATTATCGAC CCGCATGAAA ATCTCATTCT AGCCGTGGTC GGGTCTATCA GTATTGTGGT GGGGTTAGCG ACACAGGAAC CGGCTAAAAA TATGATTGCA GGGTTTATTA TCATGATTAA CCCGCCATAT CGCGTTGGCG ACATGGTCAC ATTGTCAGGC CATTACGGCG AAGTCATTAA GCTAGAATGG AGCGTTACCT GGTTGCGTAC TTTTGATGAC AATACTGTCA TGATCCCCAA TGCTGAAGCC TTAAAAACGG CAGTGTCTAA TGCCAACAGT GGCGCTTTAG ATGAAATGGT TGTGGTAAAA TTTACTTTGC CTATGCTTGT TGACCACAAA AAAGCCATTG CCCTTGCCCG CGAAGCCACA CAGTGCTCAC CTTATACTTT TCTAAATAAG CCCATTATTG TCAATTTAGG TAACGAATAT GACTTAGGCG AGTTTTTACA AACCATTACC GTTAAGGCCT ACGTAATGGA TGTACGTCTA GAGAAAAAGT TCATGAGCGA CATTAATATC AGAGTATTGA GTGCGTTTAA AAAAGCACGT TTTTATGATG GACAGCAAAC GCCGACACAC TAA
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Protein sequence | MEDSRKALQA FLDIISFDRI ISILLLCLMA WLLLVLIQFC LNQLNKALPK YRLIWNRSYP FVRLFVWLSV IVYSIVGIID PHENLILAVV GSISIVVGLA TQEPAKNMIA GFIIMINPPY RVGDMVTLSG HYGEVIKLEW SVTWLRTFDD NTVMIPNAEA LKTAVSNANS GALDEMVVVK FTLPMLVDHK KAIALAREAT QCSPYTFLNK PIIVNLGNEY DLGEFLQTIT VKAYVMDVRL EKKFMSDINI RVLSAFKKAR FYDGQQTPTH
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