Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0660 |
Symbol | |
ID | 4278181 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 769532 |
End bp | 770752 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638133417 |
Product | ATP-dependent RNA helicase SrmB |
Protein accession | YP_749358 |
Protein GI | 114561845 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATTTG AAGATTTCCA GCTCGACCCT AGCTTATTAG AGTCACTCAA GGCCATGGGA CACAACACCC CTACCACTAT TCAGCAGCAA ACTATTCCAT TGGCCATGGA TCAGCGGGAT ATTTTAGCGC GTGCGCCAAC CGGCACCGGT AAGACAGCCA GTTTTTTACT GCCTGCTTTA CAGCACCTTA TTGACTTCCC ACGTCGTTTT GAAGGCCAAG CACGCATTTT GGTGCTAACG CCAACACGTG AATTAGCCAG TCAAATTCAT CGTTATGCAA GCCATTTAGC CACTGGGCTT GAGCTTAATA TCGCCATTAT TACTGGTGGT GTGCCATATG GTCCACAAGA AGAAGCACTT GCAGACAATG TTGATTTATT GATCGCCACC CCTGGTCGAT TAATGGAATA CCTAGATAAA GACAAATTTG ACGCCACTGA AGTTGAAATT TTAATTATTG ATGAAGCTGA CCGTATGCTT GATATGGGTT TCTCATCAGT AGTGCAATCA ATTGCCATTG AAGCTCAAGG CCGCAAACAG AACATGCTGT TTTCTGCCAC GCTTGAAGGT AATGGGGTTA ACCGTTTCGC TCGCGACTTA TTAACCGATC CAGTAATGGT CGATGTTGAA GCGCCACGCA GTGAAAAAGC CAAAGTACAC CAGTGGGTTC ACTTGGCTGA CGATCAAGCA CATAAATTTG CGTTGTTATG TCATATTCTT CAACAAGAAA ATGTTACACG CACCATTGTG TTTGTTAAAA CTCGCGAAAT GGTTGCCAGC CTTGAAGGTT TATTGCTAAA AGCGAATATC CCATGTGCAT TTATGCGTGG CGATATGGAG CAGAAAAAAC GCTTCCAAGC ACTGGGTCGT TTTTCTAAAG GCGAAGTTAA TGTGCTTTTG GCGACGGATG TTGCAGCTCG AGGAATCGAT GTTGATGATA TTACTCATGT GATTAACTTT GACATGCCAC GTTCTGCTGA CGCGTATGTT CATCGAATTG GCCGTACTGC GCGCGCGGGC GCAAAAGGAA CAGCGATTTC ATTAGTTGAA GCGCACGATA TGCGTATTGT GTCTAAAATT GAACGTTACA TTGAGATCCC ACTGAAACGC CGTGTGATTG AAGAACTTCG CCCTAAACAC AAAGAAGCTA AAGTGCCTGG TAAGAAAAAA GCCAATGCAA AAGATGCTCG AGTTAAATCG AAAAAATATA AGAAAAAGTA A
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Protein sequence | MQFEDFQLDP SLLESLKAMG HNTPTTIQQQ TIPLAMDQRD ILARAPTGTG KTASFLLPAL QHLIDFPRRF EGQARILVLT PTRELASQIH RYASHLATGL ELNIAIITGG VPYGPQEEAL ADNVDLLIAT PGRLMEYLDK DKFDATEVEI LIIDEADRML DMGFSSVVQS IAIEAQGRKQ NMLFSATLEG NGVNRFARDL LTDPVMVDVE APRSEKAKVH QWVHLADDQA HKFALLCHIL QQENVTRTIV FVKTREMVAS LEGLLLKANI PCAFMRGDME QKKRFQALGR FSKGEVNVLL ATDVAARGID VDDITHVINF DMPRSADAYV HRIGRTARAG AKGTAISLVE AHDMRIVSKI ERYIEIPLKR RVIEELRPKH KEAKVPGKKK ANAKDARVKS KKYKKK
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