| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0608 |
|---|
| Symbol | |
|---|
| ID | 4278530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 708988 |
|---|
| End bp | 710253 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638133365 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_749306 |
|---|
| Protein GI | 114561793 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTG CAGATTTATC GTTACATCCC ATATTGATTA ATCGCCTAGC TGAATTAAAA
TATCAGCAAC CTACGCCTAT CCAATTACAA GCAATTCCGG TTATTTTAAG CGGTAAAGAC
GTGATGGCGG GGGCGCAAAC GGGCACTGGG AAAACGGCTG CATTTGCATT ACCGTTACTG
CATCAATTAT TGACTCATCA AGATAATCTA GCTGCTCAGC CAGACACTCA ACATATTAAT
TCGACCCCGA TAACGGCGCT TGTATTAGTC CCAACTCGAG AGTTAGCCCA ACAAGTGCAC
AGTAGTATTG AGCAATATGC TTATGGCAGT TCAGTCACTA GCGTGATGGT TTATGGCGGG
GTTAGCATTG GCGAACAAAT CCGTCAGTTA GCCAATGGCA CCCATATTTT GGTGGCGACT
CCAGGGCGGT TATTAGACTT GCTGCGTAAG CGTGCGTTGT CATTATCACA ATTAACTCAT
TTGGTATTTG ATGAAGCCGA TCGCATGCTG GACATGGGCT TTAAAGATGA AATTGTCGAA
GTACTTAAGC GCTTGCCAAG TACACGGCAA ACGTTATTAT TTTCAGCCAC CTTAGATGAC
CGAATGCTCA GTTTTAGTCG GCGCTTATTA CGCTCACCAC AGGTGATTGA AGTGGCTCAG
CGAAATACCA CCGCCAGCAG TATTGTTGAG CGAGTGTTTA ATGTCGACGC TAATCGAAAG
TGCGCCATGC TGTGCCATTT AATTACCCAA GAAAGTTGGC TGCAAAGCTT GATATTTAGC
CGCACCAAAC AAGGTGCTGA TGCACTGGTA AAGCAAATGA AACAAGCTGG CGTGGCAGCT
GAAGCATTTC ATGCTGACTT ATCTCAAGCA GTACGTGAAC AAGTGTTAGC AGCATTTAAA
GCCGGTGAGG TGACCGCGTT AGTCGCAACG GATGTGGCTG CAAGAGGTTT AGATATTAAC
GAGTTAAATT ATGTCGTTAA TATGGAGTTA CCGTTTCAAG TTGAAGACTA CGTGCATCGA
ATTGGCCGCA CAGGCCGAGC AGGTAAAGCA GGGCAAGCGA TCACGTTATT AAGCATCGAT
GACGAGCCGT TATTAACTAA ACTAGAAGCC TTTTTAGACC GACGTTTACC ACAGCAATGG
CTGGCAGGTT TTGAGCCAGA TCTGGATTTA ATTGCTCCAG TTACCCGTAA AACAACTAAA
TCGGCATTAA AACAACAAGC ACGTAAAAAG GCATTAGCGG CATCTTCACG CGGTAAAAAA
CGCTAA
|
|---|
| Protein sequence | MSFADLSLHP ILINRLAELK YQQPTPIQLQ AIPVILSGKD VMAGAQTGTG KTAAFALPLL
HQLLTHQDNL AAQPDTQHIN STPITALVLV PTRELAQQVH SSIEQYAYGS SVTSVMVYGG
VSIGEQIRQL ANGTHILVAT PGRLLDLLRK RALSLSQLTH LVFDEADRML DMGFKDEIVE
VLKRLPSTRQ TLLFSATLDD RMLSFSRRLL RSPQVIEVAQ RNTTASSIVE RVFNVDANRK
CAMLCHLITQ ESWLQSLIFS RTKQGADALV KQMKQAGVAA EAFHADLSQA VREQVLAAFK
AGEVTALVAT DVAARGLDIN ELNYVVNMEL PFQVEDYVHR IGRTGRAGKA GQAITLLSID
DEPLLTKLEA FLDRRLPQQW LAGFEPDLDL IAPVTRKTTK SALKQQARKK ALAASSRGKK
R
|
|---|
| |