| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0588 |
|---|
| Symbol | |
|---|
| ID | 4278757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 682064 |
|---|
| End bp | 683005 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638133346 |
|---|
| Product | WD-40 repeat-containing protein |
|---|
| Protein accession | YP_749287 |
|---|
| Protein GI | 114561774 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2319] FOG: WD40 repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCTG TCTCTGGCTG CAATCAAGCG GAGGTGATGA AAACCCCCGA TAATATTCAA
CCACTTGTTC AAGAAACGCT AATTGATGGC GTACTGTCTA ACGATGCCAG TATGGCTGTC
ACATTAGGCA GAAGCCGTAC ATTATCAATT TGGGATGTAG CAACAAGCCA ACTAATACAT
CAATGGTCTG ACGATGACTT TGATGAAACC AATTATCTGC TGGCGTTATC AGGTAATAAA
CAATTCCTTG CGACTGCTGG CAAACAAAAA ATATCCGTTT TTAACCTTGA GACAGGCAAA
TTAGACATAC GTTGGCCCGC CCAGGGATTT AATCCCGATG CCAGTATTTC GAGCCTTTTT
CTGAGCCAAA CAGGCAGCAC TATTTTGGTG GGAATGAATG ATGGTTCAAT TACAGTGATA
CAACGAAGTA GCATGACAAT GTCATTGTTT AAACAACACA GCGCCGCCGT TAATCATGTT
GAGCTATCGG GCTTTGAGCA GCAGGTATTA TCGACTGGAC TTGATGGTGA TGTACATATT
TGGGCTGCTT ATAGCGGTGA GTTGATCAGC AGTTTCTCAC GTCCTCAACA AATCACCAGC
GTGAGTTTTG ATGACGCTAA TCGGCGCTTA TTTATTGCCG ATGCACTCGA TAACAATGTC
ATTATCGATA CCCAAACAAC GCAGCCAGTA AGTCATCTAG ATTACCTTGA ACGCTATCGC
TATTTTCGGC AGGCGTTATT CGTCAATCAC GGCAAAAACT TAATTACCGC AACGTCAAAA
CAAAGTGTTA TCTATTGGGA TGCCTCATCT GGAAAAGAGC TTTCTCATTG GGATATCACC
GCCTATAACG CTGGCACCAC GGTATTTTCA ATGATAATGA AACCTAATGG TAAGCTATTA
ACCTTAAGCT CAGATGGCGC ACTTGAGACG TGGAGCTTAT AA
|
|---|
| Protein sequence | MMAVSGCNQA EVMKTPDNIQ PLVQETLIDG VLSNDASMAV TLGRSRTLSI WDVATSQLIH
QWSDDDFDET NYLLALSGNK QFLATAGKQK ISVFNLETGK LDIRWPAQGF NPDASISSLF
LSQTGSTILV GMNDGSITVI QRSSMTMSLF KQHSAAVNHV ELSGFEQQVL STGLDGDVHI
WAAYSGELIS SFSRPQQITS VSFDDANRRL FIADALDNNV IIDTQTTQPV SHLDYLERYR
YFRQALFVNH GKNLITATSK QSVIYWDASS GKELSHWDIT AYNAGTTVFS MIMKPNGKLL
TLSSDGALET WSL
|
|---|
| |