Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0485 |
Symbol | |
ID | 4278549 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 551424 |
End bp | 552158 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638133243 |
Product | two component transcriptional regulator, winged helix family protein |
Protein accession | YP_749185 |
Protein GI | 114561672 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.773776 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGGAA CCGCGAAACA TAATGGCCAT GTTTGTCCGC AACATATTTT GCTAGTCGAA GACGAACAAG ACTTGGCTAA GTTAATCATA CTTAACCTCA AAGCACTCAA CTACAGCGTC GACCACGCCA CCACCTTGAA GCAAGCCATG CACATAATCG AGCATAAAAA GCTCGACCTT ATATTAATGG ATCGCATGCT CCCCGATGGT GATGGCATTA TGCTGTGTGA GCAACTACGC CAAGACGGTA AGGAAGTTCC ACTGATGCTA CTAACCGCCA AAGATTCAGA AGCAGATGTG GTACTTGGTC TTGAAGCTGG GGCAGATGAT TACCTCGTCA AACCTTTTAG CGTATTAGAG CTGCGCGCAC GAGTAAAAGC ACTATTAAGA CGCGGCAAAA CGCAACATGA ACAAACACAA CAAATTGAAT TTAACAGCGT ATCCATTAAC TCCAGCACCC GTGAAGTTAC CGCCTTTAAT AAAGCGTTAA CCCTCACCGC CCGCGAGTTT GATTTACTGC TATTTTTAGC CAAACACCCG CAACAAGTCT TTAGCCGCAT GCAACTGCTA GAAGCGGTAT GGGGCTATAA CTACGATGGC TATGAGCACA CTGTAAACAG CCACATCAAC CGTTTACGCA ACAAGCTTTC TTTGTGCTCG CCTGAACATG ATCTTGTCAA AACCGTGTGG GGCGTAGGCT ACAAATTTTC ACCACCAGAG GTGCAAGCCC ACTAA
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Protein sequence | MNGTAKHNGH VCPQHILLVE DEQDLAKLII LNLKALNYSV DHATTLKQAM HIIEHKKLDL ILMDRMLPDG DGIMLCEQLR QDGKEVPLML LTAKDSEADV VLGLEAGADD YLVKPFSVLE LRARVKALLR RGKTQHEQTQ QIEFNSVSIN SSTREVTAFN KALTLTAREF DLLLFLAKHP QQVFSRMQLL EAVWGYNYDG YEHTVNSHIN RLRNKLSLCS PEHDLVKTVW GVGYKFSPPE VQAH
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