| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0467 |
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| Symbol | |
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| ID | 4277080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 534205 |
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| End bp | 536130 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638133225 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_749167 |
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| Protein GI | 114561654 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCCCC TCATAACTCA TCAGTTACAA CAGCAATGTA AATATCACTT TAGGGTGTTA
ATTGGATTAT TTTTGCTGTT GATTAGCCAA AACTGTTGGG CTAGTACACT CTCTGGGGTA
CCGCTTAGAC TTACATCAGA TTCCATAACA AAAATTGAGT TACAAGACTG GGTTTATGCC
AATCAAAGTA ATGATATTGA AAACCTAACC ACATTATTAC AACGGCCAGA AAACAGCTGG
AAAAAAATCG ATACCAATCA ACCATACAAA ATAGGCATTA AAAACTATTG GGTGAGTTTT
AGTATATTTA ATCCCAACGA CCATCTATCA CGCATTATTG CCTTAGATAA TCCATTACTC
GACAGTGTTA AAATATACCA CCTGATCAAT GGGGAGCTGG TCAGTACTGA AGTCATGGGC
GACTCCTTGC CATTTAAGCA ACGACCATTA GAAAGCAATA TCTTTTTATA TCCAGTCAAT
TTTGAACCTG GTGATACTCA TACTTTTTAT CTGAAAATAG ACAGTAAAGG TAGTATCAGT
TTGCCATTAG TGTTGTGGTC ATCAAACGAC CTAACACGGC TAACCGAAAC CAAGAACTTG
TTTAGTGGTA TGCAAATAGG CTTATTACTC GCTATTTGCT TGTTCAGTTT ATTTATTGCC
CTTGCGTCAG CATCTTATAG TTACAGTTAT TACAGCGGCT ATGTATTAGG ACTTACATTA
CTCACGGCGA CAATACATGG CGTATCATTT CGCTATTTAT GGCCTCAATG GCCCATCATA
CAGCAGTATA TTTTCATCAT AATCATCCCA TTAACACTGG GGTTTTCATT GATGTTTACT
GAGAAAGTAT TACAGCTAAA ATATCATAAT CTAAAAATGC TGCGTATTTG CCGCATCATG
GCAGTGCTTT GTTTTGGCTT AACTATCATC ATGCCATTTA TTAACTACAG TTTTGCACTG
TATTTTCTAG CATTTGTAGT ATTAACTATG AGTACAATTT TAATGGCTTT CTCCTTGATC
CAAGCTTTTG GCGGCCAACG TAATGCTCCT TTATACGCCA TAGGCCGTAT GGGTTTAATG
GTTGGGTGCA TTATCACAGG GCTAATTTAT CTCGGCCTAA TCACTCTGAG CATATCGCCA
CAGATACCCG TAATGATAGG GCTCACTTTT GAAGTAATCA CTATGGCTGC AGTGCTCGCC
TTACGTTATA ACGATGAGCG AAAAGCTAAA TTTGAGATCC AGCAACAGAC ATTAGAACAA
GCACAACGAC TTAGAGAGAT CCGTGAAGAA GCGCTGCGTA ACGAAGCTGA AAACAGTGAA
AAACTTGAAC AAATGGTACA AGAACGAACA CTTGAATTAG AAATTACCTT ACGCGAACTC
AATGAGGTCA ATCAAAAGCT GACTGAGCAA AACACTATAG ACAGCCTTAC CGGAGTGAAA
AATCGTAGTG CTTTTGATCG TCGTCTAATT GCAGAAGGCC GTATTAGCCG TCGCCAACAA
ACACCTATGT CTTTGTTAAT GATTGATATC GATAAATTTA AAAATATCAA TGACCAATAC
GGTCACCTTA GTGGCGACTA CACCATAAAG ATGATTGCAA ATACATTATG TGAATACGTA
AAACGTCCAA CGGATCTCGT ATCACGTTTT GGTGGTGAAG AATTTGCTAT TATTTTACCT
TGTACAGATA TTGAAGGTGC CCTGCTAGTT GCAGAGCAAA TTCGCCAAGC CATCAGCGAG
CTTACTATTG TCCATAATGG CCACACGATA CCCTTAACGG TCAGTATCGG TGTCAGTGAA
ACAATTATCG AAAGTGATGA GCACCCAATG CTATTACTAG AACAAGCAGA TAAAGCCCTG
TATAAAGCTA AACGCAGCGG CCGAAACAAA GTCTGCTATT ACCCGCTCGA AACAGACGAG
ATCTAA
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| Protein sequence | MMPLITHQLQ QQCKYHFRVL IGLFLLLISQ NCWASTLSGV PLRLTSDSIT KIELQDWVYA
NQSNDIENLT TLLQRPENSW KKIDTNQPYK IGIKNYWVSF SIFNPNDHLS RIIALDNPLL
DSVKIYHLIN GELVSTEVMG DSLPFKQRPL ESNIFLYPVN FEPGDTHTFY LKIDSKGSIS
LPLVLWSSND LTRLTETKNL FSGMQIGLLL AICLFSLFIA LASASYSYSY YSGYVLGLTL
LTATIHGVSF RYLWPQWPII QQYIFIIIIP LTLGFSLMFT EKVLQLKYHN LKMLRICRIM
AVLCFGLTII MPFINYSFAL YFLAFVVLTM STILMAFSLI QAFGGQRNAP LYAIGRMGLM
VGCIITGLIY LGLITLSISP QIPVMIGLTF EVITMAAVLA LRYNDERKAK FEIQQQTLEQ
AQRLREIREE ALRNEAENSE KLEQMVQERT LELEITLREL NEVNQKLTEQ NTIDSLTGVK
NRSAFDRRLI AEGRISRRQQ TPMSLLMIDI DKFKNINDQY GHLSGDYTIK MIANTLCEYV
KRPTDLVSRF GGEEFAIILP CTDIEGALLV AEQIRQAISE LTIVHNGHTI PLTVSIGVSE
TIIESDEHPM LLLEQADKAL YKAKRSGRNK VCYYPLETDE I
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