Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0430 |
Symbol | |
ID | 4278407 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 474956 |
End bp | 476878 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638133188 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_749130 |
Protein GI | 114561617 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.612077 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCTGT TCAGGCAGAT CTATGCGTTA CTTTTCGGGC TTTTCTTGTT AACGATTGCA AGCGTAGCCT ATGTACAATT TTCAGAAACC CAAGGTTTCT TATCCAAACA AATGGAATCT GACCTCAATA ATGCCAGTAA TTCATTAGGA TTAATGCTTA CTCCTGTTTT AGAGGCTGGT GATGATGCCG GTGCAGAAAC ATTAGTGAAT GTTATTTTTG AAGGCGGCTA TTATCAACAA ATCAAATTGA CTTGGTTGGT AGATGGTAAG CAACAAGTGT GGAATAACTC TGTTAAAGTC GATAATATTC CTCAATGGTT TATCAATCTT AACCTGTTTA AAACCATTAA AAAACAAACC ACTATTACCT CTGGTTGGTT ACAGCTTGCT ACACTTGAAA TTACAGCTCA CCCAGGGTTT GGCTATCAGG AATTATGGCG GATTATTTCC GACATAATTA TTCTATTTTC AATCTTATTT CTTATCGCCA TTATATTTGC GCGAGTGGGA TTAAGCTGGA TTTTAAAACC TTTAAACACA CTTTCCTTAC ATGCCAAGCA AATAGCAGCA CAACAATTTG GCCCCGATAT GCCAACGCCA AAAACGAGGG AGCTTAAAGA GCTAGTCAAC GCATTTAACA GTATGTCAGC GCAATTAAAA CAAGTATTTA ATTCTCTTGA CGAAGAAGTC TCTGCATTAA GAAAGAAAAA TCTTGTTGAT CAAGTCTCAG GGCTACCAAA TAGACAATAT ATGGTCAGTC GAGTTAATGG TTGGTTAAGC GAACCCAGTA CAGGCGCACT TTACTTAGTC AAAATGGATT GGCTAGAGGA TGTACATAGC AAATACGGTT TCCAAGTTCG CGATGAGACT ATTCGCATAC TGGCTGAAAA GCTGCAACAT CATCAAGATG AAATAGCTTC TTCTGTTATC GCCCGTATTG CAGCGTATGA ATTCGCCTTC CTTGTTGAAG ACTGTGAACA TGACCAACTG GCTAAGTATT TACAAAGCCT CATACGTACT GTTAATAAAG AAATATCTAA AGCTGGCTGT AAACCAAACG AACAGTTTTA TATTGGTGTC GCAGAACGTC TAGGACAAAT GACAGTGTCA GATATGTTGG CACAAGCAGA TAACGCACTC CAGCAGTCCA TTAAAGACGA CAAAGTGTTC CATTGGTTTG AGAACACCCA AAAGCAGCTG TTTACCCGTG AAGAATGGCG CAATAATTTA AGTCATGCCA TAAAGAACAA AAAATTCCAA TTTCGTTGGC AGTCGATCCA ACTTTGTGCC AAAGATGAAA TTTGTCAGCG TGAGCTATAT TGCCAACTGC AAATTGGCGA CACAATCTTG CACGCAGGTC AGTTTGTACC ATACATAGAA TTACTTTCAC TAGGCACTAT GTTCGATCGT TGTTTAATAG AAACAGTCAA TGAACATCGT TTACTCGAGC GCAATTATGA ACGCGTCGCC ATCAACCTTA CTTATCAGAG CATAAGCGAT GTTGATTTTC ATCTTTGGCT AAAACAGTTT CTTCGGGCAA ATAAATACGC TGAACGTATT TGCTTTGAAA TCCCAGAGGC GAGTGTATAT AGCGATTTAG AATCTTGCGA AAATCTCTGC AAAGTCATTC GAGATTCTGG TGCTCAGTTT GGTATCGATC ATTTTGGCCG TCAATTCGGC TCAATGGCCT ACTTACAAAG CCTGCGTCCA AATTATGTCA AACTAGACCA GTCATTTGCT TATATTGAAG AGAATCAACA CAACAGTGAA TTATGTCGTG CTTTAGTGAA TGTAGCTAAA GGATTAGATA TTCAAGTGAT TGTCACGGGG ATCCAAGAAG CAAAGCAGTT AACACGATTT ACTGAACTCA GAGTCGATGC TTATCAAGGC TTTATTGTAC CGCCGGTCAA TGTGAAGCTC TAA
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Protein sequence | MTLFRQIYAL LFGLFLLTIA SVAYVQFSET QGFLSKQMES DLNNASNSLG LMLTPVLEAG DDAGAETLVN VIFEGGYYQQ IKLTWLVDGK QQVWNNSVKV DNIPQWFINL NLFKTIKKQT TITSGWLQLA TLEITAHPGF GYQELWRIIS DIIILFSILF LIAIIFARVG LSWILKPLNT LSLHAKQIAA QQFGPDMPTP KTRELKELVN AFNSMSAQLK QVFNSLDEEV SALRKKNLVD QVSGLPNRQY MVSRVNGWLS EPSTGALYLV KMDWLEDVHS KYGFQVRDET IRILAEKLQH HQDEIASSVI ARIAAYEFAF LVEDCEHDQL AKYLQSLIRT VNKEISKAGC KPNEQFYIGV AERLGQMTVS DMLAQADNAL QQSIKDDKVF HWFENTQKQL FTREEWRNNL SHAIKNKKFQ FRWQSIQLCA KDEICQRELY CQLQIGDTIL HAGQFVPYIE LLSLGTMFDR CLIETVNEHR LLERNYERVA INLTYQSISD VDFHLWLKQF LRANKYAERI CFEIPEASVY SDLESCENLC KVIRDSGAQF GIDHFGRQFG SMAYLQSLRP NYVKLDQSFA YIEENQHNSE LCRALVNVAK GLDIQVIVTG IQEAKQLTRF TELRVDAYQG FIVPPVNVKL
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