| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0377 |
|---|
| Symbol | |
|---|
| ID | 4278793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 408290 |
|---|
| End bp | 409693 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638133131 |
|---|
| Product | sporulation domain-containing protein |
|---|
| Protein accession | YP_749078 |
|---|
| Protein GI | 114561565 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.22835 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACGACTC CAGGACTATT ACTACTCCCT ACCCAAGAAG CGCTCATTCA GCGTTTACAG
CATATTGCTA GTTATAGCGA ACAGTTGTTG GTTATTTGTG GTGATAACGG TTCAGGTAAG
TCGACACTGA CGGCTGCATT AGCCAGTGAG CTAGATGATT ATAATTCAGC ATTGGTCATT
TGTCCTCAAC ACGCTGATAG CGCTGAAATT CGTCGAAAAA TTCTGGTTCA ATTAATCTCC
GCGCCAATTT TTGATGATGA ACGTCCTTTG ATGGACACCG TACTGAGAAT CCAATCTAGT
TTAAAAAAAC CGTTACATAT CATTATTGAT GATGCTGATT TATTGCCTAA AGATATTTGG
GCTGAGTGCA TTCTGCTGAG CCAAATTCAC TGTGCAGGTA AACCTGTTGC AGTAACAGTG
ACCGTCACTC CTAGCTTTTG GCATACTTTA GTGGCTGAGT TAACTGATGA GACTCGTGCT
AGATTACTGC CTGTGACGAT TGAGCCTTTA TCTGTACCTG AGCGTGATGG TCTTTATCAA
AGTTTATTAC TCCGTAGCCA GCAAACACCG TTTATCCCGC GTGAAATTAT TCATAAGCAA
TTAGAGAAGC AACGGGGTAC GCCAGCTGAA GTAGTTCAAT TATTAGCGTT AGCATTAGAA
GAGCCACAAA CAGTGCGTTC ATCTTGGTCT GCGTCTATTA AAATGATGAT TGCTTCTGTC
ACCATATTAG CTGGCGTGGC GATGTGGTGG GGGATTAGTA CACAATTACC TCCTCCGATT
TCAGCATCAT TGTCGCCAGT ATTAACAGCC GAGCAATCCG CTGTACGTGT AAAAGCCGCT
CAATATGTCA TTGATTATGC CGACAGTTCA TTAAGCGCTT ATTTTGCCCA TAGGCAATTG
GTCTTAGCTA AGTCGAGTGC CAATGAACAA GCACATTTTA TCATCGAGCA GCAAATGACT
GCTGATAGTT CACTAGTAGA GCAAGGTGAG ACTAATCTCA TAGAAGAGGT TCCTGCAGAT
AATCACATTG ACGTAGTGGT TAATTCATCA TTAAAAGGTT TGTCTTTCCG AGGTAAGTTA
CCCAAAGCGC AAGTTAACAC TGTAAATAAG CCGAATGATA TTGTTGAGCG TGATAATACC
CCTAACCTAA AGGTGAAAGG TTTTACGCTG CAACTTGCTA GCGTGAATGA CAAAGACTCA
CTTACACCAA TTTTAGTTAA ACTGGCACAA GAGCCGCAAG TTTACATAAT GAAATACAAA
CAACGCCACG TTATATTACT GGGTGATTTT GATACCGCAT CGGCAGCTAG CTCAAAAGCG
AAAAGTCTTC AGAAAAAATA TAGTTTAGCG GCTCCATGGG TAAGAAAGTG GGCAGACTTA
AGTGATTATA AGCGACAAGA TTAA
|
|---|
| Protein sequence | MTTPGLLLLP TQEALIQRLQ HIASYSEQLL VICGDNGSGK STLTAALASE LDDYNSALVI
CPQHADSAEI RRKILVQLIS APIFDDERPL MDTVLRIQSS LKKPLHIIID DADLLPKDIW
AECILLSQIH CAGKPVAVTV TVTPSFWHTL VAELTDETRA RLLPVTIEPL SVPERDGLYQ
SLLLRSQQTP FIPREIIHKQ LEKQRGTPAE VVQLLALALE EPQTVRSSWS ASIKMMIASV
TILAGVAMWW GISTQLPPPI SASLSPVLTA EQSAVRVKAA QYVIDYADSS LSAYFAHRQL
VLAKSSANEQ AHFIIEQQMT ADSSLVEQGE TNLIEEVPAD NHIDVVVNSS LKGLSFRGKL
PKAQVNTVNK PNDIVERDNT PNLKVKGFTL QLASVNDKDS LTPILVKLAQ EPQVYIMKYK
QRHVILLGDF DTASAASSKA KSLQKKYSLA APWVRKWADL SDYKRQD
|
|---|
| |