Gene Sfri_0318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0318 
Symbol 
ID4277405 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp346128 
End bp347138 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content47% 
IMG OID638133072 
Producttransketolase, central region 
Protein accessionYP_749019 
Protein GI114561506 
COG category[C] Energy production and conversion 
COG ID[COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.726078 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTATAA AATCTTTTAG AGAAGCACTC AACGAAGGCA TGCGTGACGC CATGCTAGAA 
GATCCGTCAG TCATACTATT AGGCGAAGAT ATTGCCGGTG GCTTAGGTGC AGCTGGACAA 
CAAGATGCTT GGGGCGGTGT ACTAGGCGCA ACTCATGGCT TAATGACGGA GTTTGGTCGT 
GACCGTGTAT TTGATACTCC CATCAGCGAA AGCGCATTTA TTGGTGCCGC TGCTGGTGCT 
GCTGCAACGG GATTAAGGCC TGTTGCTCAG CTTATGTTTG TTGATTTTTT TGGCGTTTGT 
GGAGATCAAA TCATCAACCA AATGGCTAAA TTTCGCTATA TGTTCGGCGG AAAAGCCACA 
ACACCAGTGG TTGTAAGAAC CTTATATGGG GCTGGCACAG GAGCCGCAAG CCAACATAGT 
CAATGTCTGT ATCCTATTTT CACCCATATT CCCGGCTTAA AAGTGGTTAT TCCATCTTCA 
CCCTATGAAG CCAAAGGGCT GATGTTACAA GCCATTCGTG ATGATGACCC AGTGATATTT 
TTTGAACATA AAGCCATGTT CAACGATAAG GGCGAAGTGC CTGATGAACC CTACGTCATT 
CCATTTGGTC AAGCCCGTAC TGTGCGTGAA GGTCGTGATG TCACTATCGT AGCCATTGGT 
CGTATGGTTG GTTTTGCTAG CAAAGCAGCT GATGCATTAG CCCAAGCGGG TATCGAATGT 
ACCATTATCG ATCCGCGCAC CACGTCACCG CTTGATGAGA AGGCAATATT AGCGTCGGTT 
GAACAGACTG GCCGGCTAGT AGTAGTTGAT GAAGCCAGCC CTCGTTGTGG GATGGCAGCA 
GATATCAGTT CAATTGTGGC TGAATACGCA TTCTCAGCGC TAAAAGCCCC GATTAAACGT 
GTTATGCCAC CACACTCTCC GGTGCCGTTT GCACCGAATC TTGAACAAGC TTACATCCCT 
AGCGTTGCAG ATATTGAAAT TGCAGTGCAA GCAGTAATGA GGAAACACTA A
 
Protein sequence
MSIKSFREAL NEGMRDAMLE DPSVILLGED IAGGLGAAGQ QDAWGGVLGA THGLMTEFGR 
DRVFDTPISE SAFIGAAAGA AATGLRPVAQ LMFVDFFGVC GDQIINQMAK FRYMFGGKAT 
TPVVVRTLYG AGTGAASQHS QCLYPIFTHI PGLKVVIPSS PYEAKGLMLQ AIRDDDPVIF 
FEHKAMFNDK GEVPDEPYVI PFGQARTVRE GRDVTIVAIG RMVGFASKAA DALAQAGIEC 
TIIDPRTTSP LDEKAILASV EQTGRLVVVD EASPRCGMAA DISSIVAEYA FSALKAPIKR 
VMPPHSPVPF APNLEQAYIP SVADIEIAVQ AVMRKH