Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0310 |
Symbol | |
ID | 4277205 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 339162 |
End bp | 340562 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638133064 |
Product | periplasmic sensor signal transduction histidine kinase |
Protein accession | YP_749011 |
Protein GI | 114561498 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.445983 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTAAAAA ACAATCCATT TAACGGGCTA TTTTTTAAAT TATTGTTAGG CTTTTGGCTA TGCAGTTCAT TGATTATTGC ACTGGTGTCT TTATTGCCAT TACTGCAACA AAACCATGAT CGTTCACCAT TACCTCCCAG TCTTGAGCGA GTACTTAAAA GCGTTGCAAA ACGAATACAA GAGCAACCTC AATTACTCGA AGGTAAAAAT CTTCAACGTC TGCACCGTAG CCGCAATAAA CAAGGCGATA GAAACCATAA TGCTGGTCCA TTGCGCTTAT ATTTAACCGA TGGCGAAGGC CAAGTATTAA ATACCAAACG AGTATCGCGA GGATTTAGAC GCTTTCAACT CATGGCAGAA GAAGCAGACC ATCCGATCAG CCATCAATTT AGAGATGAAC TTATTTTCGG CCCCTATTCT TTTGTGGTCA ATGGCAAGCC GTATCAATTA TTTGGCCGCT TCCCCGATAA TCATCCACGG CCGTGGTTCT TTTTCTTTGC CGACAATAAA TTACTTACTG CAGGCTTAGC CATTTTACTG TCTGGCTTAT TATGCGGTTT GCTCGCATGG TATTTGGGTA AACCATTACG TTCGCTAAAG CACAGTGCCA ATGCCCTCGC TAGAGGTGAT TTATCTAGCA GAGTCGATGC CGCTACCGCA AATCGTCGTG ATGAAATGGG CCAATTGGCA CAGGCTTTTA ATGGAATGGC CGATGCAGTG CAAGCCATGA TTAACAACCA GCAACGATTA ATGGGTGATA TTTCTCATGA ACTGCGCACA CCACTCACTA GGCTGCAATT AGCCTTAGCT TTAGGCCGTA AAAAAGGGCA GCAAAGTGAA GAGCTAGAAC GTATCGGCTA TGAAGCCTTA CAACTTGAAG CGCTAATAAG CGAGTTACTC ACTCTATCTC GGGTAAGCTT AGCCAGCCAT GAAAATAAAG TCGTACTCGA ATTAGCAGAA TCTTTAAGCC AAGTGTTAGA TGACGCCGAA TTTGAAGCCG AGCAGCAAGG CAAACTATTA CAAATTGATA TACCAGAGGC ACTGCAATTG CCTCTTCACC CAAAGACACT CTCGCGCGCC ATAGAAAATC TGCTGCGTAA TGCAATTTGC TATGCCAATA GCCAGATAAC CATTAGTGCA GCCCAAGTTG GCAAACACAT ATTAATTACA GTGGAAGACG ACGGTCCAGG TATAGATCCA AAAGAGCTCG AAGCTATTTT TAAGCCTTTC TATCGCCCCG ATACAGCCAG AGACAGGCAA AGTGGTGGGT GGGGTTTAGG GTTGGCTATA ACTCAAGCTG CTATTACGTT ACATCAAGGC AGTATTGTGG CAGAAAACCT TATCGGCCCA ACAGGAAAGC GCGAAGGCCT TAAGCTCAGT ATCAGTTTAC CGGTTAGCTA G
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Protein sequence | MLKNNPFNGL FFKLLLGFWL CSSLIIALVS LLPLLQQNHD RSPLPPSLER VLKSVAKRIQ EQPQLLEGKN LQRLHRSRNK QGDRNHNAGP LRLYLTDGEG QVLNTKRVSR GFRRFQLMAE EADHPISHQF RDELIFGPYS FVVNGKPYQL FGRFPDNHPR PWFFFFADNK LLTAGLAILL SGLLCGLLAW YLGKPLRSLK HSANALARGD LSSRVDAATA NRRDEMGQLA QAFNGMADAV QAMINNQQRL MGDISHELRT PLTRLQLALA LGRKKGQQSE ELERIGYEAL QLEALISELL TLSRVSLASH ENKVVLELAE SLSQVLDDAE FEAEQQGKLL QIDIPEALQL PLHPKTLSRA IENLLRNAIC YANSQITISA AQVGKHILIT VEDDGPGIDP KELEAIFKPF YRPDTARDRQ SGGWGLGLAI TQAAITLHQG SIVAENLIGP TGKREGLKLS ISLPVS
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