| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0267 |
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| Symbol | |
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| ID | 4278070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 296557 |
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| End bp | 298065 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638133021 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_748968 |
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| Protein GI | 114561455 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAT TCCCACTTTC TAGTGTGCTA TTAGGCGCGT TTGTTGGGGT AATGATCCCC
GCGGCTTTCA CATCACCTGT CGCTTATGGC GCAGAGCACG ATCATGCCCA GCATCAGTCG
CAAGCCAGTA AAACTTATAC TTGCCCGATG CATCCTGAAG TGATCAGTGA TAAAGAGGGA
ACCTGCCCCA TCTGTAATAT GTTTCTCGTC GTCAAAGAAG AGGAAGAAGA GTCCACCATT
GACGACACTC AAGATCCAAT GGCAAATATG CAAAGTGCGA CTCCTGTAAA ACAAAGCCAA
GCAGATAAGG TATTTAGTCA ACCTAAGCCC ACATTAGTGC CGGCAGCAAA TCAGAGCGAT
AGCACCAATG TAAAATATGT CTGTCCAATG CATCCACATG TGGTGTCCGA TGCTCCTGGA
ACCTGCCCTA TTTGCGGGAT GAACCTAGAG AAAGTCACCG TTACCGATGC AAGCCAAGAA
ATTGTTGTCG GTGTTTCTGG CGGGATGCAA CAAGCTTTGG GTATGCGAAG CCATGTAGTT
GAAAAAACCA GTTTGTCGCG CCAAGTGAAT ACCATAGGCA CGGTGCAATA TAATGAAAAT
GCGATTGGCC ATGTGCATAC ACGCGCAACC GGATGGATAG AAACGCTCAC GGTACATAAC
GTGGGACAAC AGATAAAAAA AGGCCAACTT TTATATGAGC TTTATTCACC CGAGCTCGTC
AATGCCCAAG ACGACTATTC CCAAGCTCAA GACTACCTTT TGCAAGATAA AAAACGAGGT
AGCAGTTTAT TACTTAAAGC ACGTAAACGC TTAGAGCTGC TTGGCGTCGA TACCTCGATA
ATTGATCGTT TAGAAAAAAC CGGTGAAACC ATTTTTAAAG TGCCTTTTTA TGCCCCACAA
GATGGCTTTA TCAGTAAGCT AACCGTGCGT CATGGCATGT ATATTCAGCC TGGAGATACC
TTGTTTGAAA TCGTTAATTT AGACAGTGTA TGGGTCATTG CTGATGTATT TGAAAATGAA
CAAAGCTGGC TACAACAAGG CCGTAAAGTC AGTGTTAGCG CTGCAGCACA AGGGCTGTTT
GATATTGACT CGACAATTGA CTATATCTAC CCAGAATTAG ACCCTGTCAC CCGAGCGATG
CGGGTGCGGA TCAAGCTTAA CAATCATAAC GACAAACTCA GACCAGGCAG TTTAGTTGAT
GTGACCTTAT TTGGCCTGCC AAAAGATAAT GTGCTCACTG TACCAACTGA AGCACTGATC
CTTACCGGAC GTGAAAACCG CGTGGTGGTG CAACGCAGTG ATACCAGCTT TGCTTCGGTG
CCAGTCAAAA TTGGTATGAT GGCAGACGGT AGAGCCGAAA TCTTAGAAGG ACTGAATGAA
CATGACAAAG TGGTTATTTC AGGGCAGTTC TTATTAGATT CAGAAGCCAG TATTCAAGGC
AGTTTACAGC GTTTAAGTAA TGCGCCAACG ACCAAAGAAT CAACCACTAC CGATGCTCAC
CAGCACTAA
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| Protein sequence | MKKFPLSSVL LGAFVGVMIP AAFTSPVAYG AEHDHAQHQS QASKTYTCPM HPEVISDKEG
TCPICNMFLV VKEEEEESTI DDTQDPMANM QSATPVKQSQ ADKVFSQPKP TLVPAANQSD
STNVKYVCPM HPHVVSDAPG TCPICGMNLE KVTVTDASQE IVVGVSGGMQ QALGMRSHVV
EKTSLSRQVN TIGTVQYNEN AIGHVHTRAT GWIETLTVHN VGQQIKKGQL LYELYSPELV
NAQDDYSQAQ DYLLQDKKRG SSLLLKARKR LELLGVDTSI IDRLEKTGET IFKVPFYAPQ
DGFISKLTVR HGMYIQPGDT LFEIVNLDSV WVIADVFENE QSWLQQGRKV SVSAAAQGLF
DIDSTIDYIY PELDPVTRAM RVRIKLNNHN DKLRPGSLVD VTLFGLPKDN VLTVPTEALI
LTGRENRVVV QRSDTSFASV PVKIGMMADG RAEILEGLNE HDKVVISGQF LLDSEASIQG
SLQRLSNAPT TKESTTTDAH QH
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