| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0186 |
|---|
| Symbol | |
|---|
| ID | 4277588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 201080 |
|---|
| End bp | 202354 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638132940 |
|---|
| Product | competence/damage-inducible protein CinA |
|---|
| Protein accession | YP_748887 |
|---|
| Protein GI | 114561374 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1058] Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA
[COG1546] Uncharacterized protein (competence- and mitomycin-induced) |
|---|
| TIGRFAM ID | [TIGR00177] molybdenum cofactor synthesis domain
[TIGR00199] competence/damage-inducible protein CinA C-terminal domain
[TIGR00200] competence/damage-inducible protein CinA N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTAG AAATGATTTG TACTGGTGAA GAGGTACTAT CTGGTCAGAT AGTGGATACC
AATGCTGCTT GGGTTGCTAA TACCTTGATG GAATTAGGCA TTGAGATGCA ACATAGAGTG
ACAGTTGGCG ATCGGATGGA TGACCTTGTT GCCGCATTCC AAGAGCGTAG TAAGCATGCT
GATGTCATTA TCGTTAATGG TGGTTTGGGG CCTACTAGTG ATGATATGTC TGCATTAGCC
ATGGCGAAAG CTAAAGGCGA AGAACTTGTC GAAAATGTAC AATGGCGTGA ACATTTAGAA
GATTGGTTTA CCCGTAATAA TCGTGTAATG GCTAAGAGTA ATTTGAAGCA AGCTTGGTTA
CCAGCTTCTG CTGTGATGGT TGATAATCCA GTCGGAACAG CATGCGGCTT TAGAGTGAAG
TTGAATAATG CGTGGTTATT CTTTACACCA GGTGTGCCTT TTGAATTAAA GCACATGGTC
ACAGAGCAAT TTATTCCATT TATTACTGAA GAGTTTGGTG TTCAAGAAAA GTCAGCTTTA
GAAAAATTAC TTACTATTGG TCATGGAGAG TCATCTTTAG CGGATACTCT ATCAGAGATC
ACTTTACCAG CTGGAATTGA GTTAGGTTAT CGTTCTTCAA TGCCACACAT TGAAATTAAG
ATATTTGCTC GTGGTGATAA AGCTATTCGT CAGTTACCTG ATGTAACAAA GCAGGTTAAA
GCTTTATTAG GTTGTGCGGT TGTTGCTGAA AATCGCCCAA CATTAGCAGC AGAGATCCAT
CATCGATTAT ACCAGTCTGG TTTTAGCCTT AGTGTGGCAG AGTCTTGTAC TGGTGGCATG
ATCACCAGTC AATTGATCGA TTTTGCAGGT AGTTCTTCGT ACTTGCATCA TGGTTTAGTG
ACTTACAGTA ATGAGTCTAA AGTGAAAGTG CTGGGCGTTA ATCCACAGAT CTTAGATGAT
CATGGTGCAG TATCTATTCC TACTGTTGAA GCAATGGCGC AAGGTGTTCG AGGCATTTTA
GACAGTGATT TTGCATTAGC CACTAGCGGT ATTGCAGGCC CTGATGGAGG ATCTGATGAC
AAACCTGTTG GAACAGTTGC AATAGCATTA GCAACTAAAC ACGGTGTATA TAGCCAAATG
GTGAAGTTAC CTAAACGATC ACGCCAGCTT GTAAGAAGTA TGAGTACGGC AATTGCTTAC
GATATGCTAC GTCGTGCATT ACTTGAAGAG GCCGTTATTG TTGATTATCC GTCAATACCT
CGGTTTGCCA AGTAA
|
|---|
| Protein sequence | MKLEMICTGE EVLSGQIVDT NAAWVANTLM ELGIEMQHRV TVGDRMDDLV AAFQERSKHA
DVIIVNGGLG PTSDDMSALA MAKAKGEELV ENVQWREHLE DWFTRNNRVM AKSNLKQAWL
PASAVMVDNP VGTACGFRVK LNNAWLFFTP GVPFELKHMV TEQFIPFITE EFGVQEKSAL
EKLLTIGHGE SSLADTLSEI TLPAGIELGY RSSMPHIEIK IFARGDKAIR QLPDVTKQVK
ALLGCAVVAE NRPTLAAEIH HRLYQSGFSL SVAESCTGGM ITSQLIDFAG SSSYLHHGLV
TYSNESKVKV LGVNPQILDD HGAVSIPTVE AMAQGVRGIL DSDFALATSG IAGPDGGSDD
KPVGTVAIAL ATKHGVYSQM VKLPKRSRQL VRSMSTAIAY DMLRRALLEE AVIVDYPSIP
RFAK
|
|---|
| |