Gene Sfri_0117 details

Gene Information

• Locus tag: Sfri_0117
• Symbol: nudE
• ID: 4277187
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 129912
• End bp: 130499
• Gene Length: 588 bp
• Protein Length: 195 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638132858
• Product: ADP-ribose diphosphatase NudE
• Protein accession: YP_748818
• Protein GI: 114561305
• COG category: [L] Replication, recombination and repair; [R] General function prediction only
• COG ID: [COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACACAGC GGCATAAAAA GCCGGAAATC CTGCATACTG AAATTGTTGC CAAAAGCAGA 
CTGTTTCAAA TCGAGCAGGT ACACCTTAAG TTTTCTAATG GCGTAGAGCG TCAATATGAA 
AGAATGAAGG GCGGTAGCAG AGGTGCTGTG ATGATTGTGC CTATTCATCA AGGTAATTTA 
CTATTAGCTA GTGAATACGC AGCCGGCACT GATAATTATG AACTCGGTTT TCCTAAAGGG 
TTGATAGACC CTGGCGAAAC AGCAGTTGAA GCCGCTAATC GTGAGCTCCA AGAAGAAATT 
GGTTTTGGCA GTTATCAATT GACTCATCTA AAAGAGTTAT CACTTGCGCC AGGCTACTTT 
TCCAGCAAAA TGCATATTTT TGTCGCTGAA AAACTGTACC CTAGCCGTTT AGAAGGGGAT 
GAGCCTGAGC CAATAGACGT GATCCCTTGG CCATTATCTG ATTGGCAGTT ATTACTCGAG 
AATGTTGATT TTTCAGAATC TCGTAGTGTT AGTGCGCTTT TTTTAACTCA GCAATATCTC 
AATACACCAA CAGATAATCT TACAAATGAA GTCAACGGCG TAAAATAG 

 

Protein sequence

MTQRHKKPEI LHTEIVAKSR LFQIEQVHLK FSNGVERQYE RMKGGSRGAV MIVPIHQGNL 
LLASEYAAGT DNYELGFPKG LIDPGETAVE AANRELQEEI GFGSYQLTHL KELSLAPGYF 
SSKMHIFVAE KLYPSRLEGD EPEPIDVIPW PLSDWQLLLE NVDFSESRSV SALFLTQQYL 
NTPTDNLTNE VNGVK