| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0116 |
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| Symbol | |
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| ID | 4277186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 129169 |
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| End bp | 129834 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638132857 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_748817 |
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| Protein GI | 114561304 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTCCTT GGTATAAAAT AGATACGGTG CTTCTCGACA TGGATGGTAC CTTGCTTGAT
CTGCATTTTG ATAACCACTT TTGGTTACAT CTTGTACCGC AACAATTAAG CATGCAACGC
AAAATAAGCT TGGATGAAGC CAATACACTC GTCAAACAAG CTTATTATGA TGTGGTAGGA
ACCTTAGATT GGTATTGTCT TGATTACTGG CAACGCTATT TACAACTCGA TATTTTGGCG
CTACACCATG CATCGGCAGA CAGAATTAAA CTTCGCCAAG ACAGTATGCC CTTTTTACAA
GCATTAGCAG GGGCAAGCAA ACAACGCATT TTGTTTACCA ATGCTCACCC TCAAAGCTTA
GCGCTTAAGC TAACTCATAC CAATTTAGGC CACGGTTTAG ATAAAATGTT ATCGAGCCAT
GAAAGCGGTT ATCCCAAAGA ACATCCGCAA TTTTGGCAGT ATGCACTGAC TAAGTTCAAC
TTGGATCCGT CACGGTGTTT ATTTATTGAT GACAGCGAAG TGATATTAGC GGCATCGAAA
AAGGCAGGTA TAGGTTATCA ACTCGGGATT AAAAATCCCG ATAGCCAGAA ACCTCATATT
GAATTTGCCA ACTTTCCCGC GATTACAGAT TACCAGCCGC TATCGTTGGC ACTGAACTCG
GTATAA
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| Protein sequence | MFPWYKIDTV LLDMDGTLLD LHFDNHFWLH LVPQQLSMQR KISLDEANTL VKQAYYDVVG
TLDWYCLDYW QRYLQLDILA LHHASADRIK LRQDSMPFLQ ALAGASKQRI LFTNAHPQSL
ALKLTHTNLG HGLDKMLSSH ESGYPKEHPQ FWQYALTKFN LDPSRCLFID DSEVILAASK
KAGIGYQLGI KNPDSQKPHI EFANFPAITD YQPLSLALNS V
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