| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_2163 |
|---|
| Symbol | |
|---|
| ID | 4270158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | - |
|---|
| Start bp | 2458946 |
|---|
| End bp | 2459896 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638126919 |
|---|
| Product | Flp pilus assembly protein CpaB-like protein |
|---|
| Protein accession | YP_742995 |
|---|
| Protein GI | 114321312 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3745] Flp pilus assembly protein CpaB |
|---|
| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.143104 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGCC GGGTTCTGAT CGTACTGGCG ATTGTTTTTA TCGGGGCGGC ACTGGTGGTG
GGCTGGTGGG GCATCAGCCT GGTCACCGAT GACGAGTCCG AAATCCGCAT TGACGAGGTC
ACCGACGTCC CCGAGCCCGA TGAGCCTCGG CCGGATGAGG ATGGGCATCC GGTGGTGTTC
GCAGTCACGG AGCTGGAGCC GGGGCAGTTG GTCGGCGAAG CGGATATCCA TACCGAGACC
CTGCGGCGGG TCCCGCCGCT GGCCTTTTCC GACCCCGAAG AGGTGATCGG GCTGCGGGTT
GAGGCCCCGA TCCAGGAGGG CGAGCTGCTC ACCGCGCCGC GCTTCTCCGT GGCCAGCCAG
GTCAGCCGCG GGCTGCTGCC CGGCGAGCGG GCGGTGGCCA TCAGTGTCGA CGACGTGATC
GGGGTCGGCG GCTACCTGTC GCCGGGCGAT CGCGTCGATG TCATGCTCTA CCTGAGTCAG
CGCGGCGTGG GCGAGATCGG CCGCCTGCTG CACCCCAATA TCCGCGTGCT GGCCTACGGC
GAGGACCTGG CGATTCCCCC GGACGGCGTG GTCGACCGGC GCGACGAGGA GGGCACTCAG
CGCCAACGGG GCGCGCGCAC GGCGGTCCTC GCCCTGCCGG AGGAGGACGT CGCCACCCTG
CTGCTGGCGG ACAGCGCCGG GACCCTCCGT CTCGCCGCCC GGCCGGCCAT CGAGCGGCGT
CCCGATTTCG ATCCGGAGGC CTTCGAGGCG GAATGGGGGA CGGAGCCGGC GGAGCGCTTC
GCCCGCCTCC GCACCCTGCA CAGTCCCGAC GACCCGCGGG CCTGGGGCCG CGTCGCGCTG
ACCGACCTGC TGCCCGTGGA GGCGGTGGCG GATGAGCCCG CGCCGGAGCC GCCGCCGGTT
TACCTGCACC GCGGCACGCA GCGGGAGACG GTCCGCCCGG GCCAAAATTA A
|
|---|
| Protein sequence | MNSRVLIVLA IVFIGAALVV GWWGISLVTD DESEIRIDEV TDVPEPDEPR PDEDGHPVVF
AVTELEPGQL VGEADIHTET LRRVPPLAFS DPEEVIGLRV EAPIQEGELL TAPRFSVASQ
VSRGLLPGER AVAISVDDVI GVGGYLSPGD RVDVMLYLSQ RGVGEIGRLL HPNIRVLAYG
EDLAIPPDGV VDRRDEEGTQ RQRGARTAVL ALPEEDVATL LLADSAGTLR LAARPAIERR
PDFDPEAFEA EWGTEPAERF ARLRTLHSPD DPRAWGRVAL TDLLPVEAVA DEPAPEPPPV
YLHRGTQRET VRPGQN
|
|---|
| |