| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_1401 |
|---|
| Symbol | |
|---|
| ID | 4270623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | + |
|---|
| Start bp | 1606305 |
|---|
| End bp | 1607087 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638126157 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_742240 |
|---|
| Protein GI | 114320557 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.278227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.338656 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAGGG AATCAATGGA ATGGAGCCTG GTCACGGGCG GCGGCACCGG TCTGGGCCGG
GCGCTGGCGC TGGCGCTGGC CGCCCGGGGC CAGCGAGTCA TCATCACCGG GCGCCGTCCC
GGGCCGCTGG AGGCGACCGC GACCGCCGCG CCTGACGGGG CCGTGGTCCC GGTGCCGGCC
GACGTGGCGC AGGAGGAGGG CCGCCAGCGG ATCGGCCAGG CCGTCGACCA GCACGCGCCG
AATGGCTTGC GTTTCCTTAT TCACAATGCC GGCACCATCG ACCCCATCGG GCCGTTGACC
GAGCTCGATC CCGAGCAGTG GCGGAGGAGC CAGGCGATCA ACGTAGAGGG GCCGCTGTTT
CTCACCCGGT CCCTGTTGTC CCGCCTGCCC GCCGGCAGCC GGGTGCTGCA CATCTCCTCC
GGTGCCGCCC ACAGCCCGAT CCCCGGCTGG GGGGCCTACT GCACCGCCAA GGCCGCCCTG
CACATGCTCT ACCAGTGTCT GGACGGCGAG CTGCGTGACC GGGGCATCCG TGTCGGCAGC
CTCCGCCCGG GGGTGGTGGA CACCCCGATG CAGGCACACA TCCGTGCCAG TTCCGAGGCG
GCGTTCCCGC TGGTGGAGCG ATTCCGTGCC CTGCACCGAG AGGGGGAGTT GCGGTCGGCC
GAGGAGGTGG CCGACTTCGC CTGCTGGGTG CTCAGTGCCA CCGACGACGA CCGCTACGCA
TCGTCGGAGT GGAATATCTC CGACCCCGAG CAGACCCGTG ACTGGCAGCG CAGCCCCGGG
TAA
|
|---|
| Protein sequence | MSRESMEWSL VTGGGTGLGR ALALALAARG QRVIITGRRP GPLEATATAA PDGAVVPVPA
DVAQEEGRQR IGQAVDQHAP NGLRFLIHNA GTIDPIGPLT ELDPEQWRRS QAINVEGPLF
LTRSLLSRLP AGSRVLHISS GAAHSPIPGW GAYCTAKAAL HMLYQCLDGE LRDRGIRVGS
LRPGVVDTPM QAHIRASSEA AFPLVERFRA LHREGELRSA EEVADFACWV LSATDDDRYA
SSEWNISDPE QTRDWQRSPG
|
|---|
| |