Gene Shewmr7_3514 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3514 
Symbol 
ID4256260 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp4163195 
End bp4164487 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content55% 
IMG OID638124198 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_739551 
Protein GI114049001 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTCAA TCACTCAGAA ATCTATTTTC CATTCTTTTT CTACTGTGTC TGCTACGGGC 
TTAAGGTCGT TGTTTACTCC TTCCCGCTTA GCGCTGGCGC TGATGCTTAC CTCGTTAACT
ATTACGGCCC CCACCTTCGC GGGTGAAGGC CATGACCACG GCGCTGAAAA GGTGGCCAAT
ACCGCTGAAA AGAGCGTAAG TGCAACAGAA GATGACCATG GTGAGCAGGC ACTCACTCTG
ACGCCTGCGC AGTTGGAACT TGCAGGGATC CGCCTCTTAC CCCTGAACAG TGACAGCTTA
AGCCTAAGCA ACCTCAATCT CGATACTATG GCGACCGCCA CTCTAGTGGT CGACCGTGAT
AGAACCGCCA CTTTGGCGCC ACAGCTCGAT GTACGTGTGC AGGCGCGCCA TGTTGTGCCC
GGTCAAGAGG TGAAAAAAGG TGAGCCCTTA CTGACCTTAG GTGGGGCAGA AGTCGCCAAG
GCGCAGGCCG AATATATCAA TGCCGCCGCC GAGTGGAACC GTGTGCGCCG CATGAGTGAA
AGCGCCGTGA GCGTGAGCCG CAGAATGCAG GCGCAGGTCG ATGCCGAACT TAAGCGAGCG
ATTCTGGAGG CGATCAAAAT GACGGATGAA CAGATCCGTA CCTTAGAGTC GACCCCAGAA
GCTATCGGCA GCTATCAGTT ACTGGCGCCT ATCGATGGCC GTGTGCAGCA GGATATCGCC
ATGCTAGGTC AAGTGTTCAC CGCTGGCACA CCATTAATGC AGTTGACCGA TGAGTCGCAT
CTTTGGGTTG AAGCGCAATT AACCCCAGCA CAGGCGGCCA ATGTGAATGT CGGCGGCCCG
GCGTTAGTGC AGGTCGGGGA TAAAACCTTG GCGGGCAAGA TTATCGGCCG TTCCCATGAG
CTGGATAGCG TGACGCGCAC CGAGCAGATT TTAGTCAGCA TGCCAAACCC TGAGCATGTG
TTGCACGCGG GACAATTTGC CGAGCTTTAC TTTGCCGATG CGCCTGCAAG TGCAGACGGA
GCCGCTTCCT CATCGGGCTT CTCATCTGGA ATCGTCCTGC CCGATGCGGC GCTAACACGT
GGCGGTGATG GTGATTGGCA GATTTTTGTT CAAGACGAAG ATGGTTTTGA AGCCATAGAG
GTGGAGCTGG TTCAGCGTCA ACGTGGCTTA AGCCTAGTAC GCGGGGATGA GTTAGATAAG
GCGCGGCAGG CACAACAGAA AGTGGTGATT GAGGGGGCGT TTTTCTTGGC ATCGGAGCAG
GCCAAAGCTG GCTTTGATAT TCATGCCCAC TAA
 
Protein sequence
MNSITQKSIF HSFSTVSATG LRSLFTPSRL ALALMLTSLT ITAPTFAGEG HDHGAEKVAN 
TAEKSVSATE DDHGEQALTL TPAQLELAGI RLLPLNSDSL SLSNLNLDTM ATATLVVDRD
RTATLAPQLD VRVQARHVVP GQEVKKGEPL LTLGGAEVAK AQAEYINAAA EWNRVRRMSE
SAVSVSRRMQ AQVDAELKRA ILEAIKMTDE QIRTLESTPE AIGSYQLLAP IDGRVQQDIA
MLGQVFTAGT PLMQLTDESH LWVEAQLTPA QAANVNVGGP ALVQVGDKTL AGKIIGRSHE
LDSVTRTEQI LVSMPNPEHV LHAGQFAELY FADAPASADG AASSSGFSSG IVLPDAALTR
GGDGDWQIFV QDEDGFEAIE VELVQRQRGL SLVRGDELDK ARQAQQKVVI EGAFFLASEQ
AKAGFDIHAH