Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_3459 |
Symbol | |
ID | 4257655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 4105499 |
End bp | 4106473 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638124144 |
Product | diguanylate cyclase |
Protein accession | YP_739497 |
Protein GI | 114048947 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAACG ATCAAAGCGC AATGAACGAA CTCCATTGGC TTATCGATAT GGTGCAAACC ATCGAAGTGG GTCTAGTGGT ATTAGATCGC GATTATAATA TCCAACTGTG GAACGGCTTT ATGGAAAACC ATAGCGGCGT ATCCCCTAAT TCGATTAAAG GGCAAAACCT GTTCACCCGT TTTCCTGAGC TGCCTGCGAC TTGGTTAAAG CAAAAGATGG AATCGGTTTT TATGCTGAAA AATCGAGCCT TTATCAGCTG GGAACAAAGA CCCTACGTGT TTCAGTTTAA AAACTACCGC CCCATTACCG GACGGGCCGA TTTTATGTAC CAGAACGTGA CGCTGTTGCC TCTGGCCTCA TTAACCGGAA AAATCACCCA TATCAGCGTG ATTATTTATG ATGTCACCGA CATCGCCGTT AACAAGCTAC AGCTCAAGGC CGCCAACGAG CAGTTAGAAC GCCTCAGCCA GACCGATGGC CTGACACAGC TCCATAATCG CCGCCATTGG CAACAATGTT TAGAGCATGA GTTTGACCTC TACGCCCGTT ATTCGGGGAT GTCGAGCTTG GTCATGATAG ACATAGACCA TTTCAAAAGA ATCAACGATA CCTACGGCCA TGTCGCGGGT GATAAGGTCA TTCAGCATAT CGCCCATATC CTAAGCCATT CATTACGGGA GACCGATTGT GTCGGCCGTT ATGGCGGTGA GGAGTTTGCG GTGGTCATGC CCAATACCTG TGGCGCCGAT GCCCTCAACT TTACCGAGCG TTTGCGGGAA AGAATCGCCG ACTCCACCAT AGTGTACGAA GGGTTGAAGA TAAAAGTCAC GGTGAGCCTT GGCGTGTGTG AAATTGGCAA ACATATCACT AGCAGCTCTG GCTGGATTTC TTGCTCAGAC AAAGCCTTAT ACGAAGCCAA ACAGAAGGGG CGTAACTGTA GCGTCCTGCA CACCGCTCAA ACTAGTGGTT ACTAA
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Protein sequence | MSNDQSAMNE LHWLIDMVQT IEVGLVVLDR DYNIQLWNGF MENHSGVSPN SIKGQNLFTR FPELPATWLK QKMESVFMLK NRAFISWEQR PYVFQFKNYR PITGRADFMY QNVTLLPLAS LTGKITHISV IIYDVTDIAV NKLQLKAANE QLERLSQTDG LTQLHNRRHW QQCLEHEFDL YARYSGMSSL VMIDIDHFKR INDTYGHVAG DKVIQHIAHI LSHSLRETDC VGRYGGEEFA VVMPNTCGAD ALNFTERLRE RIADSTIVYE GLKIKVTVSL GVCEIGKHIT SSSGWISCSD KALYEAKQKG RNCSVLHTAQ TSGY
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