Gene Shewmr7_3459 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_3459 
Symbol 
ID4257655 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp4105499 
End bp4106473 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content48% 
IMG OID638124144 
Productdiguanylate cyclase 
Protein accessionYP_739497 
Protein GI114048947 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAACG ATCAAAGCGC AATGAACGAA CTCCATTGGC TTATCGATAT GGTGCAAACC 
ATCGAAGTGG GTCTAGTGGT ATTAGATCGC GATTATAATA TCCAACTGTG GAACGGCTTT
ATGGAAAACC ATAGCGGCGT ATCCCCTAAT TCGATTAAAG GGCAAAACCT GTTCACCCGT
TTTCCTGAGC TGCCTGCGAC TTGGTTAAAG CAAAAGATGG AATCGGTTTT TATGCTGAAA
AATCGAGCCT TTATCAGCTG GGAACAAAGA CCCTACGTGT TTCAGTTTAA AAACTACCGC
CCCATTACCG GACGGGCCGA TTTTATGTAC CAGAACGTGA CGCTGTTGCC TCTGGCCTCA
TTAACCGGAA AAATCACCCA TATCAGCGTG ATTATTTATG ATGTCACCGA CATCGCCGTT
AACAAGCTAC AGCTCAAGGC CGCCAACGAG CAGTTAGAAC GCCTCAGCCA GACCGATGGC
CTGACACAGC TCCATAATCG CCGCCATTGG CAACAATGTT TAGAGCATGA GTTTGACCTC
TACGCCCGTT ATTCGGGGAT GTCGAGCTTG GTCATGATAG ACATAGACCA TTTCAAAAGA
ATCAACGATA CCTACGGCCA TGTCGCGGGT GATAAGGTCA TTCAGCATAT CGCCCATATC
CTAAGCCATT CATTACGGGA GACCGATTGT GTCGGCCGTT ATGGCGGTGA GGAGTTTGCG
GTGGTCATGC CCAATACCTG TGGCGCCGAT GCCCTCAACT TTACCGAGCG TTTGCGGGAA
AGAATCGCCG ACTCCACCAT AGTGTACGAA GGGTTGAAGA TAAAAGTCAC GGTGAGCCTT
GGCGTGTGTG AAATTGGCAA ACATATCACT AGCAGCTCTG GCTGGATTTC TTGCTCAGAC
AAAGCCTTAT ACGAAGCCAA ACAGAAGGGG CGTAACTGTA GCGTCCTGCA CACCGCTCAA
ACTAGTGGTT ACTAA
 
Protein sequence
MSNDQSAMNE LHWLIDMVQT IEVGLVVLDR DYNIQLWNGF MENHSGVSPN SIKGQNLFTR 
FPELPATWLK QKMESVFMLK NRAFISWEQR PYVFQFKNYR PITGRADFMY QNVTLLPLAS
LTGKITHISV IIYDVTDIAV NKLQLKAANE QLERLSQTDG LTQLHNRRHW QQCLEHEFDL
YARYSGMSSL VMIDIDHFKR INDTYGHVAG DKVIQHIAHI LSHSLRETDC VGRYGGEEFA
VVMPNTCGAD ALNFTERLRE RIADSTIVYE GLKIKVTVSL GVCEIGKHIT SSSGWISCSD
KALYEAKQKG RNCSVLHTAQ TSGY