| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3194 |
|---|
| Symbol | |
|---|
| ID | 4256223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 3777794 |
|---|
| End bp | 3779356 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638123878 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_739235 |
|---|
| Protein GI | 114048685 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGTGG CGTTAATCTT AAAAAAACTC CAGTTGATCT ATGTGCCCTT TATACTGCTC
TGCCTGCTAT TTGTCTCAGG TTACAGCTTG CTCCATTGGT TGTTGATTAT CGAGTTCCAA
CTGCTGAGCA TTGACGAATC GATTATCAAT TTCTGGCTGC CGCTGATATT GCCTTGGCCC
TTACTGTTTT TCTACTTAAG ACCTCGGCTT AAGTTATTCC GCTTTACCAA GAGTAATCGC
CGTTTTATCT ATTTTGTGAT TGCCGTGCTT TTGCTCGCCG TGCCTACTAT CGTGGCGCAG
GAATACCTTA ATAGCGCAAC GGGCAAGTTG ACTCAACTCG AGTCCATCAA TGCACTATTG
CATCAGCCGC AGACCAAGTA TTACCAATTA AATCAGTTCT ATATTGATAA AAAACACATA
GGGGTGCAGC GCAATATTGA ACCCGTAGGT AAGGGCAACA GTGAGCTGCG CATGAGCCTG
TATATTGCGA TGCCAATTTT CGCTAAACGT AACGAGAGTT GGCGGGTCGG TGCTAAGGCC
TTGGCATGGT ATGGCAAAGT TTATGAGAAA ACGATCAGTA ATCGACTCGA ACAGAAAGAG
AAAGAAGCGC TATTTCAAGA GTTTATTCAT CATAGCCAGC AAGAGTTTAA TGCCTTAAAT
CCTGATGACT TTGTCTATCT TGACCGTATC GGCCCGTCTA ACCGTTACAG TCAGTTACTC
ACTGCAGCCC AAAAAAGCTC AGTCTACTTC GAGGGTTATC AAACCGTCTT GATGCCAGTG
AATCAACCCT TCGAGGCGCG TAATGGCCAT AAACTGGCGT GGATTATCGC TTGGTTAAGC
TTTGGGGCGA TTCTGTGGTT TTTGATGAGT CTGATGTTAA AGCTGGATGA GACGCAGGCG
TCTAAGGCGG CACAGCTAAG CCTAGAAAAA CCTAAGGCGG AGCTTTATGG TTTTTTAGCC
GAGTTTAGGC CTCGGCAGGG CTTTGTTATC ACGCCTATCT TGCTCTATAT CAACAGCTTA
ATATTTGTAT TGATGGCCTT TGCTAGTCAA CACTTTATCG CTTTTCCAAA CAGCGTGTTA
CTCGATTGGG GCGCAAACCT TCGGCAGTTG GTGCTTGAGC AACAAGTTTG GCGTTTACTC
AGTAATGTGT TTTTGCATGG CGGCCTGATG CATTTGGTTT TTAACTTATA TGGGCTGTTT
TTTGCGGGGA TGTTTTTGGA GCCGCTGCTG GGTAAATGGC GTTTACTCGG AGTCTATGTG
TGCTGTGGCT TAGTGGCGAG CCTGGCCAGC ATAGGCTGGT ACGAGGCGAC AATCAGCATT
GGGGCTTCGG GGGCCATCAT GGGGCTATTT GGCGTGTTGA TTATCTGGAT ATGGTTGGGC
TTATTGCCCT TGGCGGACAA TATGCCACTC GCCCTGAATC TCACCCTATT CGTCTCTGCC
AGCCTTGTTA TGGGGCTCTT TGGCGGCGTG GACAATGCCG CGCACCTTGG CGGTTTAGGC
TGTGGATTAT TGCTTGGGAG CCTACTTCGA CCAACTCGAA AGACGGCCAT ACAGCATAAA
TAA
|
|---|
| Protein sequence | MRVALILKKL QLIYVPFILL CLLFVSGYSL LHWLLIIEFQ LLSIDESIIN FWLPLILPWP
LLFFYLRPRL KLFRFTKSNR RFIYFVIAVL LLAVPTIVAQ EYLNSATGKL TQLESINALL
HQPQTKYYQL NQFYIDKKHI GVQRNIEPVG KGNSELRMSL YIAMPIFAKR NESWRVGAKA
LAWYGKVYEK TISNRLEQKE KEALFQEFIH HSQQEFNALN PDDFVYLDRI GPSNRYSQLL
TAAQKSSVYF EGYQTVLMPV NQPFEARNGH KLAWIIAWLS FGAILWFLMS LMLKLDETQA
SKAAQLSLEK PKAELYGFLA EFRPRQGFVI TPILLYINSL IFVLMAFASQ HFIAFPNSVL
LDWGANLRQL VLEQQVWRLL SNVFLHGGLM HLVFNLYGLF FAGMFLEPLL GKWRLLGVYV
CCGLVASLAS IGWYEATISI GASGAIMGLF GVLIIWIWLG LLPLADNMPL ALNLTLFVSA
SLVMGLFGGV DNAAHLGGLG CGLLLGSLLR PTRKTAIQHK
|
|---|
| |