| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2965 |
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| Symbol | |
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| ID | 4255642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 3508946 |
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| End bp | 3511096 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638123642 |
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| Product | transcriptional regulator domain-containing protein |
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| Protein accession | YP_739006 |
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| Protein GI | 114048456 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00199161 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0124128 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGATA AGAGTAAGTT GAGTTTTTGC TTAGGAAGTT GTCGCATTGA CCCTTCTGAT
AACTCAATTT CATTTCAAAC GCAGGGGGAT GAAACGTCCC AACATGAAAC CGCTAAGGTG
TCACTTCAAC CTAAGTTTAT TGAAGTGCTT AGCTATCTTG CCCTGCGTCA TCCTCATGTG
GTGACCCGTG ATGAGTTGAT CGAAAAAGTG TGGGAGGGCA ATGTTTACGT AGGTACTAAG
GCTCTCACCA ATGCAATTTG GCATTTACGA CAGCAATTAT CGCCCCTCGA GCAGGAGGGC
GGGGTAATTG AAACGGTTCG AAAGGCGGGC TACCGCCTGT TATTGCCCCC TATCTATGAT
AATTCTGATG ATGCCGACAT CGATAAACTG CAAACCACTG AGGCGAAGTT ACAACATACG
ACGCAACGAC TGCATTTGAT GGCGATATTG GTGGGGGCGG TTATCTTAAT TGCAGGTCTA
TTGATTGGCG TGCATCTGTA CCAAGATAAG CAGCGGATGA CGGAGACCCA AATGACAGTG
CTGACCCGAG ATCCGGGGTC GGAGCGTTAT CCTAGGTTAT CCCACGATAG ACGTTGGTTA
GTGTATGGTG CGAGTCGCCC TGGAGTGACT TCTAGCCTGT ATCTGAAAGA TTTTAAACGT
GAAGATATCC CCGCCCGTCA GTTAACTCCT CTCTCGTCTG CAGAGCTGCG AGCGGTGTGG
AGTTTAGACG ATACTAAGCT GTTTTTTGCC TCCCGCACCC AGGGTACAAG GGAGTGCCAC
ATCACTCAGT TGACCCTTGC GACCAATGAA ACCCTCGCCT TAGCGCCTTG CACTACCGAT
ATGGCGGCGA TAGATATTTC TGCTGACGGC CAATATCTTG CCTATGTCTC CTCCCATGAG
GCGGGGAAGG TGGGTGGCAT CTACCGCTTG TCTTTGGTGC AACCCGACGC CAAGGCTGAA
AGATTATCCT GCGAAGCGCA CTGTAACTAT GAGGACCGGG ATTTAGCTTT CAGTCCAGAT
GGTCGTTGGC TGGCAATAGC GAGGCGCTTT AGTAATATCT CGGAAGATAT TTTTATTCGG
GATTTAGCCA GTGCCAGTGA AAAGCGCTTA ACCCATGGGC TAGAAGATAT TCGTGGCTTA
AGCTGGACAC CTGATGCTCA GTCACTGGTG TTTGCAACCG AAGACTCCGG CAGTCGCAAT
GGTTTTATTA TCGATATTGA AACCACGCAT ATTCGGTCAC TCGATGTAGA GGGGATGAGT
TATCCCAGCA GCGTATCAGA GGAGGGTGAG CTGGTTTATC ACCAGTATCG TCGTCAATTC
CAAATGGCGT ATTTTTCCCT TGGGGAGTCC GTACCTGGCA GTTTGTTTCC GCTGCTGTAT
TCTAGCATCA GCCACCGAAA TCCCGATTAT TCCCCCGAGG CGAAACGGAT AGTATTTGTC
TCCAGTGAGA CCGGCTATAA CGAGATTTGG ACGTCAGATA TAAACGGCAA AAAACTTGAG
CAACATACTC ATCTCAAGTC GCGCGTAGCT TACCCGCGTT GGTCTCCCGA TGGCGCTAAA
ATCGCCTTTA TCGCCCCCGA TGACCGCAAT GAAGGTAATC GTATTTTTAT TTTAGATTTA
GCCAGTAAAA ACATTACAGC CTTAGCCTCG AGTTATCACA ATCATGGTCG CCCCAGCTGG
AATTGGCAGG GGACGGCGGT GTTGGCATCG ACCACTGATG GCATCACGGA GTTTTATTTA
GACAACAGTA CACCAAGGGT GATCAGTCCT CTGACTATGG CGGTGGGTTT TGCGAAATCG
GCTAACGAAT TTGTATTTAG TCGCTATGGG GTAAATGGTC TTTGGCAGAT TGATCTCACG
CAGCCCGAAC AGGTGCAAGA GATTATCCCG GGGAAGGTGT TTCGCGCAGG CAATAACTGG
GTGCTTACGG CAAATGGGGT GTATTTTAAA TCGAGTAATG GTAACGAGCA GAGACTGAAT
TTTTGGGAAG CGAGCAGTCA ACAGCTGACA TCACTCCTAA GGGTACCTCG CTCTAGCCTA
AGCGGTTTTG GCTCTATGAC GTATATCCCA GAGTCAAACC GCTTAGTGAT GACGCTCGAT
GGCTTTCCGC AGCGAGACAT CATCTTGCTT AAGCACAAGT TACTTAAATA A
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| Protein sequence | MKDKSKLSFC LGSCRIDPSD NSISFQTQGD ETSQHETAKV SLQPKFIEVL SYLALRHPHV
VTRDELIEKV WEGNVYVGTK ALTNAIWHLR QQLSPLEQEG GVIETVRKAG YRLLLPPIYD
NSDDADIDKL QTTEAKLQHT TQRLHLMAIL VGAVILIAGL LIGVHLYQDK QRMTETQMTV
LTRDPGSERY PRLSHDRRWL VYGASRPGVT SSLYLKDFKR EDIPARQLTP LSSAELRAVW
SLDDTKLFFA SRTQGTRECH ITQLTLATNE TLALAPCTTD MAAIDISADG QYLAYVSSHE
AGKVGGIYRL SLVQPDAKAE RLSCEAHCNY EDRDLAFSPD GRWLAIARRF SNISEDIFIR
DLASASEKRL THGLEDIRGL SWTPDAQSLV FATEDSGSRN GFIIDIETTH IRSLDVEGMS
YPSSVSEEGE LVYHQYRRQF QMAYFSLGES VPGSLFPLLY SSISHRNPDY SPEAKRIVFV
SSETGYNEIW TSDINGKKLE QHTHLKSRVA YPRWSPDGAK IAFIAPDDRN EGNRIFILDL
ASKNITALAS SYHNHGRPSW NWQGTAVLAS TTDGITEFYL DNSTPRVISP LTMAVGFAKS
ANEFVFSRYG VNGLWQIDLT QPEQVQEIIP GKVFRAGNNW VLTANGVYFK SSNGNEQRLN
FWEASSQQLT SLLRVPRSSL SGFGSMTYIP ESNRLVMTLD GFPQRDIILL KHKLLK
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