| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2455 |
|---|
| Symbol | |
|---|
| ID | 4256166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 2906167 |
|---|
| End bp | 2907840 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638123130 |
|---|
| Product | peptidase M28 |
|---|
| Protein accession | YP_738497 |
|---|
| Protein GI | 114047947 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2234] Predicted aminopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.548528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0292846 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGTT TGTATCCTGT CTGCGCGCTA GCCATGCTCA GCGCCTGCAG CCCTAATTCG
GCCCAGCCCG ATGCCAACAG CAGTGCAGCC CTGAAACCCG TGCAAATGAA TGAAGCACGC
TTTAGAGACG ATATTAAAAA CCTTTCCTCC GATGAGTTTG AAGGCCGCGC CCCCACCTCC
CACGGTGAAA AGCTCACCTT AGACTATCTG TCTAAAGCCT TTGCCGAGAT GGGACTCAAA
GGCGCCTATC AAGGCAGCTT TTTACAACCT GTACCTATGG TGAGTTATAC CGCCTACGAT
GCGCAGCAAA TCAGCTTGGC AGGATTGCCG TTAACCTTTC GCAAAGATAT CGTCTTAAAT
AGTCGCCACG ATAACGGCGG CGTCAATATC GAAAATGCGC CCTTAGTGTT TGTTGGCTAC
GGTGTAAATG CGCCTGAATA TGGCTGGAAC GATTACCAAG ATATCGATAT GAAAGGGAAA
ATTGCGGTGA TCCTTGTGAA CGATCCTGGT TTTGCCCGCC CTGACTCAGG TAAGTTTAAC
GGTAAAGCCA TGACCTACTA TGGTCGCTGG AGCTACAAAT TTGAAGAAGC GAGCCGCCAA
GGCGCGCTCG GTGCATTGAT CATTCACGAT ACTGAGCCTG CGTCTTATCC TTGGTCCGTG
GTTGAAAATA GCTGGACTGG CGCGCAGCAG GATTTAGTCC TCAGCAAAGC AGAGCAAGAT
AGCCGCGTGC AAGTCGAAGG CTGGTTAACC TTAGATGCTG CAACACAATT ATTTGAAAAA
GCAGGTTTAT CCCTACCAAC GCTGATGGCA CGTGCCGCCG ATAGTCCGAT TAACTTACCC
CTTGAGCAAA CAGCCAACAT CGCCTTTAAA AACAAAGCCG AATACGCCAA CAGCTATAAC
GTTGTCGCTA CCCTTCCCGG CACTCAGCAA GCCGATGAGC AAATCCTGTT TACGGGCCAC
TGGGACCACA TTGGCAAAGA TGACAGTAAA GAAGGCGATA AAATTTACAA CGGTGCCATG
GATAACGCAT CGGGCATTGC GGGCATTTTA GAAATCGCCA GACAACTGGC CGATAATGCT
AAACAGGGCC ACGGCTTAGC TCGCTCGGTG ACCTTTATCG CGACGACGGG TGAAGAGCAA
GGTTTACTCG GCTCACGCTA TTACGCTGCC AACCCTATCT ACCCCATTGA TAAAACAGTG
GCAGTACTCA ACTTAGATAG CACCAATATC TATGGAAAAA CCAAGGACTT CACTATCGTC
GGTAAAGGCA AGTCCGAGCT TGAAAACTAC TTAGTCGATG CAGCCAAACA GCAAAACCGT
ATTGCTTTGG GTGAAAAGAA TCCTGCATCG GGCGGTTTCT TCCGCTCTGA TCACTTCAGC
TTTGCCAAAC TTGGCGTGCC TGCGGTCTTT GCCGGTGGCG GCAGCGAACC CATAGATGCC
GCAACAGCAA GCTATAAGAC TCAAATGCAG GCGACCATGA AAGGCTGCTA CCACAATGTC
TGCGACGAAT ACCATGAAGA CTGGGATCTG AGCGGTGCGA TTCAAGATCT CGAAGTTTAC
TATCAAGTGA CTCGCAGCTT AGGCAACAGC CAAGATTGGC CTGGCTATTA TCAAGGCACT
GAGTTTAACA GCCTGCGTCC TGCCAAAACG GAACTTGCCA CGGCCGCAAA ATAA
|
|---|
| Protein sequence | MRRLYPVCAL AMLSACSPNS AQPDANSSAA LKPVQMNEAR FRDDIKNLSS DEFEGRAPTS
HGEKLTLDYL SKAFAEMGLK GAYQGSFLQP VPMVSYTAYD AQQISLAGLP LTFRKDIVLN
SRHDNGGVNI ENAPLVFVGY GVNAPEYGWN DYQDIDMKGK IAVILVNDPG FARPDSGKFN
GKAMTYYGRW SYKFEEASRQ GALGALIIHD TEPASYPWSV VENSWTGAQQ DLVLSKAEQD
SRVQVEGWLT LDAATQLFEK AGLSLPTLMA RAADSPINLP LEQTANIAFK NKAEYANSYN
VVATLPGTQQ ADEQILFTGH WDHIGKDDSK EGDKIYNGAM DNASGIAGIL EIARQLADNA
KQGHGLARSV TFIATTGEEQ GLLGSRYYAA NPIYPIDKTV AVLNLDSTNI YGKTKDFTIV
GKGKSELENY LVDAAKQQNR IALGEKNPAS GGFFRSDHFS FAKLGVPAVF AGGGSEPIDA
ATASYKTQMQ ATMKGCYHNV CDEYHEDWDL SGAIQDLEVY YQVTRSLGNS QDWPGYYQGT
EFNSLRPAKT ELATAAK
|
|---|
| |