| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2212 |
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| Symbol | |
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| ID | 4255943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 2623781 |
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| End bp | 2625910 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638122880 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_738257 |
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| Protein GI | 114047707 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.636451 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAATTTTC TATTATCTAA CAACAGCAAA CGTCGCGCTT ATCGCTGGCA ACAGGGATTT
AGCGTACTGG CCCTCAGCAG CATTAGCACC TTTTGCACCA TGGCCGCACC AACAATCACC
ACTCAAGCAA CGGCGTTACA AGCAGTGGCG GCTAAAACCA TGCCTGAAAA TCCAAATGTG
GCCGAAGGCG AAATCCTGCC AGCCCATCAC AATGGTGAGC AAGCAAATAA GTACAAACCA
GTTATTTATC AAATTTTTAC CCGACTCTAT GGCAATAAAA ACACCACCAA TAAACCTTGG
GGCACGATTA GCGAAAACGG TGTGGGTAAA TTTAATGATA TTGATGACAC AGCGCTCAAA
AGTATCAAAG ACTTAGGCGT TACCCATGTG TGGTATACGG GGGTGCCCCA CCACGCCTTA
ATTGGCGATT ACAGTGCGAT TGGCGTCAGT AATGATGATC CCGATGTAGT TAAGGGCCGA
GCCGGTTCGC CCTATGCGGT TAAAGATTAT TACAACGTAA ACCCCGATTT TGCTGTCGAT
CCCGCAAAGC GTTTACAGGA GTTTCAAGCA CTTATCGAGC GCACCCACAA GCAAGGCTTA
AAGGTGATTA TCGATATAGT GCCCAACCAT GTGGCGCGTA ATTACCATTC CATCACTAAG
CCCGAGGGCG TACGTGATTT TGGTGAAGAT GATAATCAAA CCCTTGAATA TGCAAAGCAT
AATAACTTTT ACTATGTGAC TGATAAAAAG CAATCCTCTG GCTTTCAAGT GCCCGATTTG
CCTGATAGCC TCAAACCGTT AGGCGGTGAA TCGCATCCCC TAAGTGATGG TCAATTTAAG
GAAATCCCCG CCAAATGGAC GGGCAACGGC TCACGCCTGG CCAAGCCGGA TATGAATGAC
TGGTACGAAA CCGTTAAAAT CAATTACGGT GTCCGCCCCG ATGGCAGCCA TGATTTCCCT
ACACTGCCGC CACGCTATGC CACACTCTGC GCCGAGCAGC ACTATGCTTT TTGGCAGCAA
CATAGCCATG AATTACCGAA CTCTTGGATC AAGTTCAATC AAATTACCCA GTATTGGTTA
GCGATGGGAG TCGATGGGTT TCGTTACGAT ATGGCCGAAA TGGTGCCCGT CGAGTTTTGG
AGCTATTTAA ATAGTCATAT AAAACATAGC CATCCCGAAG CCTTTATCTT AGCAGAGGTC
TACAACCCAA CACTGTATCG CGACTATATT CAGCTCGGCA AAATGGACTA CCTCTACGAC
AAGGTCGATC TTTACGACAC CCTCAAAGCC ATTATGGCAG GACAAAAAAG TACCGCGCAG
ATCGCCGCGG ATCAGGCCAA AGTGCAAGAT ATCGACTCGC ATATGCTGCA TTTTTTAGAA
AACCACGACG AACAGCGCAT CGCCAATGCC GCCTTTTTAG GCGCCTTAAA TGGTAACTCC
TCGACAGATG GGGTAGATCC GCGCTACGCC CTGCCCGCGA TGGTGGTGTC AGCAACCTTA
AGTACCTCAC CCACCTTGCT TTATTTCGGT CAAGAAGTGG GAGAAGCGGC GACGCAAAAC
CTAGGCTTTG GCCATGCGTC ACGCACCAGT ATTTTTGATT ATGCGGGTGT TCCCGCCCAT
CAGCGCTGGA TGAATCAAGG TAAATTTGAT GGTGGCCAAT CAACCGCCGC AGAAGTTGCG
CTACGTACCT ATTACCAAAA ATTATTGAAC CTGAGCACGG GGAAAAATGC GCCCGCGCTC
TTAGGGAAAT ATCACTCGCT AGATGCTGCC AACCGCAGCG CGGTATCGGC TGCAAAGGCT
AGCAATAAGG CTAACAATAA GACAAACAAT GGCAGCGCAA CGGGTTATGA TGACTCAACC
TTTGCCTTTG TCCGCTTTGA GGCCCATACA GCCAATAGCA AAGGTCAAAA GCTGATTATT
GTCAGTAACT TTAGTCAAAC CCAAGCCAAG TCATTGTCCC TTAAACTCCC CAAATCTTTG
ATTGCGCAAT GGCAGTTAAC CGATGCAAGC TATCCGCTTA AGGATTTACT GGAAGACCAT
ACGGCGCAGT TAATTGTCGA GCGAGGTGAA GGACAGGTTC AGTTGCAGCT TGCACCTCTC
TCCTCCGCGA TATTTGAACT CGTCCACTAG
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| Protein sequence | MNFLLSNNSK RRAYRWQQGF SVLALSSIST FCTMAAPTIT TQATALQAVA AKTMPENPNV
AEGEILPAHH NGEQANKYKP VIYQIFTRLY GNKNTTNKPW GTISENGVGK FNDIDDTALK
SIKDLGVTHV WYTGVPHHAL IGDYSAIGVS NDDPDVVKGR AGSPYAVKDY YNVNPDFAVD
PAKRLQEFQA LIERTHKQGL KVIIDIVPNH VARNYHSITK PEGVRDFGED DNQTLEYAKH
NNFYYVTDKK QSSGFQVPDL PDSLKPLGGE SHPLSDGQFK EIPAKWTGNG SRLAKPDMND
WYETVKINYG VRPDGSHDFP TLPPRYATLC AEQHYAFWQQ HSHELPNSWI KFNQITQYWL
AMGVDGFRYD MAEMVPVEFW SYLNSHIKHS HPEAFILAEV YNPTLYRDYI QLGKMDYLYD
KVDLYDTLKA IMAGQKSTAQ IAADQAKVQD IDSHMLHFLE NHDEQRIANA AFLGALNGNS
STDGVDPRYA LPAMVVSATL STSPTLLYFG QEVGEAATQN LGFGHASRTS IFDYAGVPAH
QRWMNQGKFD GGQSTAAEVA LRTYYQKLLN LSTGKNAPAL LGKYHSLDAA NRSAVSAAKA
SNKANNKTNN GSATGYDDST FAFVRFEAHT ANSKGQKLII VSNFSQTQAK SLSLKLPKSL
IAQWQLTDAS YPLKDLLEDH TAQLIVERGE GQVQLQLAPL SSAIFELVH
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