| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0160 |
|---|
| Symbol | |
|---|
| ID | 4257548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 182556 |
|---|
| End bp | 183032 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638120756 |
|---|
| Product | general secretion pathway M protein |
|---|
| Protein accession | YP_736223 |
|---|
| Protein GI | 114045673 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3149] Type II secretory pathway, component PulM |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAATT TGCGGACTTG GTGGCAAGGG CTTGCATCGC GCGAGCAGCA AATCGTCGGA
TTCGGCGCCG TTTTCTTAGT GATCGGCGTG TTTTACTGGG GCATCTGGAC ACCGATTGCC
AATGCCGAAG CCAATGCACT GCGCAACTTA ACGGCGCAGC AGCAGACCCT GACCTATGTA
AAGCAAACGG CAAATAAAAT CGCTGGCTTA AAACAAAGCG GCGCTAAACC GACAATGTCA
GGCAGCTTAA GCTCGGTCGT TAACCAAACA GCGGGCACTT ACGGATTAGT GATCACTCGT
ATGCAGCCCC AGGGCGATAA AATCCAAGTG TGGATGGATG ATGTGCCATT CGATGCCTTA
CTCAATTATT TGAGTGACTT AGTGCAGAAA AAAGGCCTAT CACTTGAGAG TGTTGATTTG
GCAGAGGCCG ACGCGGCTGG CTATGTCAAA GTAAGACGTA TCCAACTAGC GCAATAG
|
|---|
| Protein sequence | MDNLRTWWQG LASREQQIVG FGAVFLVIGV FYWGIWTPIA NAEANALRNL TAQQQTLTYV
KQTANKIAGL KQSGAKPTMS GSLSSVVNQT AGTYGLVITR MQPQGDKIQV WMDDVPFDAL
LNYLSDLVQK KGLSLESVDL AEADAAGYVK VRRIQLAQ
|
|---|
| |