| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3818 |
|---|
| Symbol | |
|---|
| ID | 4254381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 4558011 |
|---|
| End bp | 4559375 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638120463 |
|---|
| Product | periplasmic sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_735938 |
|---|
| Protein GI | 113972145 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00854299 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0034747 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAGC GCGCGCTTGC CTGGCAATTA TTAAACTCCC TCAAAACTCG GCTCGTCCTC
AGTGCGCTGC TGTTTATTTT GGTGCTGCTG CCGCTGATTG GCGTCGCTCT CAATGACGCC
TTTGCCGAGC AGGTAAAAAG TGCCGCTAAA AACGAGCTGA GTGCCTATGT GTATTCGGTG
TTAGCGGTGA CTGAGGTTGA AAACAAACGG ATTTTTATCC CCGAGTTGGT GCTCGAAAAC
CGCTTTAACC TCATTCAATC AGGCCTCTAT GCCATTGCCA CCACAGAGGA TGCCGAGCAT
AAGCAGAATA TTGTCTGGCA TTCGCAGTCC TTTATTGGCA TCACGCCGCC GGCGCAGTTC
ACTATTCCGC CGACGGGCAA GAGTGCCTTC GCTCAAATCG ATCTCGCTGG CGCGCCACAC
CTTATCTACA GCTTTAGCGT GAGTTTTGCC AGTCTGAATG AAAACGTGCC AGTCACTATC
CATATCATTA AGGATGAATT GGAGTTTCAA CAGCAAATCT CCCAATTTAA TCAACAACTT
TGGACTTGGT TGCTGATCTT GATCTTAGTG ATGCTGGTGT TTCAGTTAAG TTGGTTGATT
TGGACCATTA GGCCGCTGGC GCGCTTTACC CAAGAACTCC ACGATGTCGA ACAGGGTAAA
TCGACCCAAC TCAGTAGCCA GTATCCGACT GAGCTGCAGG AAGTCGCGCG GCAATTGAAT
ATCCTGCTCA ATACCGAGCA GACCCAGCGC AAACGCTATC GCAATGCCCT TGCGGATTTG
GCCCACAGCC TAAAAACCCC GCTGGCGGTG ATTAAGAGTC AGGCGGACTT AAGCGAAGCC
TCGAGCGAGC AAGTGTCGAA TATCAGTCGT ATCATCAGCC ACCAGCTGAA ACGCGCCCAA
ACGGCGGCGG CCGCTTCCTG GCATTTAGGC ATTAAGGTGG AGGAGGTCGC CGCCAAACTG
CTGCGAACCT TGGCCAAGAT TTATCGTGAG CCGCAGATTG ATCTCAGCGG CGATCTGGCA
CCACATGCCG TATTTAAGGG CGATGAGGCC GATCTGACCG AAATTTTAGG TAACTTGCTC
GATAATGCCT GCAAGGCCGC CAAGTCGCAG GTCAAATTAA CCGTCACAGG CGACGCCTAT
CAGCTCCAAC TTTGTATCGA AGACGACGGC CCGGGGATCA GCGAAGTCCT GCAAACTCAA
ATATTTGAGC GTGGGATCCG CGCCGACTCT TATCACCAAG GCAACGGCAT AGGTTTAGCC
ATAGTGCGCG ATTTAGTGGA TAGCTATAAT GGCCGCATTT CCGTATCCCG TTCAGAAAAC
TTAGGCGGCG CCAAGTTTAC GGTTAACTTC ACCCACTCGG CTTAA
|
|---|
| Protein sequence | MSKRALAWQL LNSLKTRLVL SALLFILVLL PLIGVALNDA FAEQVKSAAK NELSAYVYSV
LAVTEVENKR IFIPELVLEN RFNLIQSGLY AIATTEDAEH KQNIVWHSQS FIGITPPAQF
TIPPTGKSAF AQIDLAGAPH LIYSFSVSFA SLNENVPVTI HIIKDELEFQ QQISQFNQQL
WTWLLILILV MLVFQLSWLI WTIRPLARFT QELHDVEQGK STQLSSQYPT ELQEVARQLN
ILLNTEQTQR KRYRNALADL AHSLKTPLAV IKSQADLSEA SSEQVSNISR IISHQLKRAQ
TAAAASWHLG IKVEEVAAKL LRTLAKIYRE PQIDLSGDLA PHAVFKGDEA DLTEILGNLL
DNACKAAKSQ VKLTVTGDAY QLQLCIEDDG PGISEVLQTQ IFERGIRADS YHQGNGIGLA
IVRDLVDSYN GRISVSRSEN LGGAKFTVNF THSA
|
|---|
| |