| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3540 |
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| Symbol | |
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| ID | 4254105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4229574 |
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| End bp | 4232012 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638120177 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_735662 |
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| Protein GI | 113971869 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000560682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCGT TCCAGCCTAA AGGTTACTCC ACATTGAGAG GTTTTATGCG TCCAGCCGTT
ATCGCATTAG CAGTATCTTC AACTTTGGTT TTTCCTGTCG TACACGCAGA AGAACAGGCC
AGCAGCTTTG AGAAAATTGA AGTCGTCGGC TCGCGGATCG CCCTGCGCAC CGCAACCGAC
AGCGTTGCCC CCGTCGATAT CATTACCGCG GAGCAACTCG AATCCACCGG TATGACCGAA
ACCGCTAAGG CGCTGCAATT TGCCGCGCCA AGTTACAGTT TCCCCTTCTC ATCGGTCACC
GATGGCTCAG ACGCAGTGCG CCCAGCCAGC TTACGCGGCC TGTCACCTGA TCACACGCTA
GTACTGGTAA ACGGTAAACG CCGCCATGGT TCGGCGCTGG TGCATTTAAG TGGCACTGTC
GGCAAGGGCT CATCTAACGT CGATTTGAAC GCAATTCCGA TGACGTCAAT TAAGCGCATC
GAAATCCTGC GTGATGGCGC TTCGGCACAA TACGGCTCAG ATGCAATTGC TGGTGTTATT
AACGTAGTCT TAAAAGACAA CGACCAAGGC GGTAGCGTGT CGGCTCAAGC GGGCCAAACC
TATCTGGGTG ACGGTGAACA ATGGCGCGTA GGTGTGAACC ACGGGATCAG CCTAAACAAC
GACGGTTTTG TGAATATTGG CGTTGAAGCT CACCATAAAG ACAGCACCAA CCGCGCAGGC
TTAGATCCAC GCCAACAATA TCCTAAGCTG CCAGACGGTT CGGATGATCC GCGTGAAGCG
ACTTTCAACC GCAAGAGCCA CCAAGTGGGC GACGCCGAAT ACGATAACTT AGGCTTATTT
ATCAACGCGG CGCAGCCTTT CTCAAGCGAC AGTAAACTCT ATGCCTTCGG TGGCATTAGC
CAGCGTGAAA CCAAATCCGG CGCATTTTAT CGCCGCGCGC TCGATGCTCG TAACTTGACC
GAGCTGTATC CCGACGGCTT TTTACCGCAG ATCAATCCTA AGATCATCGA TTCATCATTA
GTCCTAGGCT ATGAGTTCAC CCTCGGTGAA TGGAATATCG ATACCTCAGC GGGCTATGGC
GGTAACTCGT TCGAATACAA TATTGTGAAC ACCCTAAACG CATCACTCGG CCCAGATAGC
CCGACAGAAT TCGATGCGGG CACCCTGTCC ACCAGCGAAG CAAACCTGAA CATCGATGCC
TCACGCTACT ATAACTTTGC CAATGATTCA GAGATCTTAG TGGCAACGGG TGTCTCTTGG
CGCCAAAACG GTTATCAGAT TGAGGCGGGT GAACCCAACT CTTATATCAA TGGCGGTTAT
GATAACCGTG CAGCGGGTAG CCAAGGCTTT ACTGGCTTTA CGCCCGAATC AGAAGTCGAT
GAGACTCGCG ACAATACAGG TGTTTATGTC GAGCTTGAAA ACCAATTAAC CACTGAGTTT
TATTGGGCGG CGGCGCTGCG TTACGAAAAC TATTCTGACT TTGGCGGTAA CACCAGTTGG
AAGCTCGCGG GCCGTTACGA CTTCACCGAC CATTTAGCGC TGCGCGGCAC AGTGAACACA
GGCTTTAGAG CGCCGAGCGT ACAACAGCTG TACTTCAGCA ATATCTCGAC CCTGTTCAAT
CCTGATCCGA CTACGGGCCA ATTAGTGCCA ACAGAATCAG GCACCTTCAA CACCTTATCG
CCAGTGACTA AAGCCCTAGG CATTAACGAG CTCGACCCAG AGCTATCGCA ATCCTTCAGC
TTAGGCTTGG TCTATACCAA TGATACGGGT CTCGCCCTGA CCTTGGATGC CTATCAGATT
TCAATCGATG ACAGGATTAT CCTCTCAAGC TCAGTGACGC CAAACGACTC ACCCGCTGTT
GCGGCGGCGC TAGCCAATAC TAATGCAGAA TCGGCGCGCT TCTTTATTAA TGCAGTCGAT
ACCCGTACTC GCGGCGTCGA TTTAGTGGTG AGCCAAGATT TTGATCTCGG CAACTGGGGC
GATTTACGCG CTAACTTGGC GTACGCCTAT AACAAAACAG AAATTCAAGA TATTCATTTC
CCTGAAATTT TGGACGGACT CGGCCCTAAA CTCTTCGATA ATATCGAACA AACCCGCATG
ACCTCGGCCA CGCCGCACAA TACGGGTAAC CTAGGACTGA CCCATGAATT AGGTGACTTT
AAGACTAATA TTCGCCTCAG CTATTTTGGC GATTATACAG TGGGTTACTC AACGGGTGAT
GTAAATTACA GCGACCAATG GGTGATGGAT TTATCCGTGC GCTACGCAGC AACCGATGCC
TTAAGCTTCA CCGCTGGCGT ACAAAACTTG TTTGATGTGT ATCCTGAAAA ACGCCCAGAT
GACAATAACT TCAATGGTAT TTTCGTCTAT CCATTAACCA ACACGCCGTT TGGATTTAAT
GGGGGTTACT ACTTCCTCGA GGCTAAGTAC ACTTACTAA
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| Protein sequence | MFSFQPKGYS TLRGFMRPAV IALAVSSTLV FPVVHAEEQA SSFEKIEVVG SRIALRTATD
SVAPVDIITA EQLESTGMTE TAKALQFAAP SYSFPFSSVT DGSDAVRPAS LRGLSPDHTL
VLVNGKRRHG SALVHLSGTV GKGSSNVDLN AIPMTSIKRI EILRDGASAQ YGSDAIAGVI
NVVLKDNDQG GSVSAQAGQT YLGDGEQWRV GVNHGISLNN DGFVNIGVEA HHKDSTNRAG
LDPRQQYPKL PDGSDDPREA TFNRKSHQVG DAEYDNLGLF INAAQPFSSD SKLYAFGGIS
QRETKSGAFY RRALDARNLT ELYPDGFLPQ INPKIIDSSL VLGYEFTLGE WNIDTSAGYG
GNSFEYNIVN TLNASLGPDS PTEFDAGTLS TSEANLNIDA SRYYNFANDS EILVATGVSW
RQNGYQIEAG EPNSYINGGY DNRAAGSQGF TGFTPESEVD ETRDNTGVYV ELENQLTTEF
YWAAALRYEN YSDFGGNTSW KLAGRYDFTD HLALRGTVNT GFRAPSVQQL YFSNISTLFN
PDPTTGQLVP TESGTFNTLS PVTKALGINE LDPELSQSFS LGLVYTNDTG LALTLDAYQI
SIDDRIILSS SVTPNDSPAV AAALANTNAE SARFFINAVD TRTRGVDLVV SQDFDLGNWG
DLRANLAYAY NKTEIQDIHF PEILDGLGPK LFDNIEQTRM TSATPHNTGN LGLTHELGDF
KTNIRLSYFG DYTVGYSTGD VNYSDQWVMD LSVRYAATDA LSFTAGVQNL FDVYPEKRPD
DNNFNGIFVY PLTNTPFGFN GGYYFLEAKY TY
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