| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3484 |
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| Symbol | |
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| ID | 4254050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4167614 |
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| End bp | 4168939 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638120122 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_735607 |
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| Protein GI | 113971814 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.317992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGTGA TCAACAAGAT GCTGCAGGAT CTCGACAAGC GCCAGCAGGG CCATTCTCTC
AGTAATGTCG CTGTGCATCA GGCGCAGTAT TTAGGGCGCC CTAATCCATC ACGCAAATGG
TTAGTAATCA GCTTAGTGTC GCTGCTGGTG GGCGGCTTAT CGGTCTATGC TTTTCAGGCG
AGTTACGGCG TAAAGAGCAT TGCTGATAAC ATTGCAAATC CTGTGATGAG TTTGCAAACT
CAGCCGGATA ACGGCAGCCC ACAGATAGAT ACGAGTCCTC TGGAAACCGA AACGACGACA
TCTACAGAGC CAACTGCCGA GATGGCACAA GTGAGTCCGT CATCGACAGA TGCTCCTGCA
AAGGATATGT CAACGTCAGC AGAATCTGCC CCAAGAGTGG CTCAATCTCC CCGTGTAAAC
GCGGCGCAGG TAGAACCAAC GAGTGAACCG ACAACCGAAT CCGTTGCGGC ACACACCTCA
AGTGATACGC CTAACAAGGC GGCATTAACC CAAGAGTCAG TGCAAACACA GGCTGAGTCA
CAACAGGTTG CGGTTAAAGC AAATCAAGCA GACGTTAACG CAAGCCAGAG TGAAGTCAAA
ATAACTCAAA CAGAGGCCAA GGCGAGTGAG CCAGTGGTGC CTGCTGGGGC TCAAGTTTCA
AGCCAAGCTT CGACTCAGGC TTCGAGCCAA GCTTCGGCTC AGGCTCAGTC AACTGGGAAA
ATGGCGATTC GAGAAGTGAA GTTATCCCCA AGCCAACTCG CGCAAAAACA GTTAGTGTTG
GCGGCGGATG CCGAAAAGCA GGGGCAGCTG GTTAAGGCCA TGGATTACTA CGCTAAAGCG
CTCAAGCTCG ACCCAAGCTT GCACGAATCG CGCAAACAAC TGGCGGCGCT GCATTATGGT
CAAGGTGAGC TGGCGCCGGC GGCCGATGTG TTGGCGCAGG GACGGTTACT CTATCCGCAA
GAGTTTGAAT TTGCTTTGCT ATTGGCAAGG GTGCAACATG CTATGGGCGA AACGGATTCG
GCTCTTGCTA GCCTTGCTCA AATTCCCGAT AGCCATCCTT TAGCTCGACA AAAGTGGTTA
GCGCAAACGG ATTTGGCCCA AAAACAAGGG CAATATCCGT TAGTTGAGCA GGCTTACCGT
AAGTTATTGC AGCAGGAACC GCAGCAGGGT AAATGGTGGA TGGGATTAGC CTATGCCCTC
GATTCACAAC AACAATTCGG CCCCGCCAGT CAGGCCTATC GCACCGCCTT AAGTTATTCA
GGCCTGTCGA CCCAAGCTAC AGCTTTTATT GAACAACGTT TACAACAACT AGGAGATAGC
CAATGA
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| Protein sequence | MSVINKMLQD LDKRQQGHSL SNVAVHQAQY LGRPNPSRKW LVISLVSLLV GGLSVYAFQA
SYGVKSIADN IANPVMSLQT QPDNGSPQID TSPLETETTT STEPTAEMAQ VSPSSTDAPA
KDMSTSAESA PRVAQSPRVN AAQVEPTSEP TTESVAAHTS SDTPNKAALT QESVQTQAES
QQVAVKANQA DVNASQSEVK ITQTEAKASE PVVPAGAQVS SQASTQASSQ ASAQAQSTGK
MAIREVKLSP SQLAQKQLVL AADAEKQGQL VKAMDYYAKA LKLDPSLHES RKQLAALHYG
QGELAPAADV LAQGRLLYPQ EFEFALLLAR VQHAMGETDS ALASLAQIPD SHPLARQKWL
AQTDLAQKQG QYPLVEQAYR KLLQQEPQQG KWWMGLAYAL DSQQQFGPAS QAYRTALSYS
GLSTQATAFI EQRLQQLGDS Q
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