Gene Shewmr4_3414 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3414 
Symbol 
ID4253980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp4077645 
End bp4079069 
Gene Length1425 bp 
Protein Length474 aa 
Translation table11 
GC content50% 
IMG OID638120052 
ProductMltD domain-containing protein 
Protein accessionYP_735537 
Protein GI113971744 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.387896 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGAAAA CCTTTCGCCA CCCCAGTGCA TTCGCTGCGC TCGTGGTCGC CATCTTGACG 
GCTCAGCTAA GCGGCTGCGC AACCACTTCG GCGCAAACCT CACCCACGGA ATACGCTGCA
GCCTTGCCAG AAGCCGAAGG CACTAGCGAA CAGACGACGC AACCTCAGCA TGTTGAGGCA
GAAGTTATCG ACGAACGCTA TACCGATGTG TGGGAGAAAA TCCAACACGC CCGTACTATT
GATGTGCATG ACGATGCTGA AGTGCGCAAA CAGCGCAACT TTTTCGATGA TAAGCAAAAG
TTTATGACTC AGGTGACCCA ACGCGCCGAG CCATTTTTAT ACTATATTGT CAGCCAACTC
GAAACCCGTA ATATGCCGCT CGAATTGGCA TTATTACCTA TTGTCGAGAG TGGCTATAAT
CCGCTTGCCC AGGCAAATGG GCCTGCTGGA CTCTGGCAAA TGATCCCTGC CACGGGACGT
AACTTTGGCC TTACCATCAA CTCAGCCTAC GATGGCCGTA AAGATGCGCT GGCCTCGACC
GATGCCGTAC TCGACTATTT ACAGCACTTG CACGACACCT TAGGTAACGA CTGGATCAAC
GCCGTTGCAG GCTATAACAG TGGCGAGCTA GTGATCAAAG CCGCTATCGA TAGAAACAAA
GCTAAGGGCA AACCCACGGA TTTCTGGTCG CTGAATATTC CGGCTCGCCA AGTGCAAACC
GTGCCTAAAT GGCTGGCCTT TATTCAAATT ATCCGCGCAC CTAGCCATTA CAATCTCAAG
GTGATGCCGA TTGCCAACCG CCCATTTTTA GAGCGTTTAC CTGCACCTAA CGGCGTTGAA
CTCAGCCAAA TCGCCAATGC TGCGGGACTC ACTAAGGCGG AGTTTAAAAC CTATAACCCT
GGTTATCGCC AAAGCGTGAT CCCAAGTAAG GGCAAATATC AAATCGCCCT GCCGATTGAA
AACATCGGCC AATACCAAGA GAATCAGCAT CAGCTGTCCG CGCAAAAACA TTACGACAGC
CAAAGCTATA TTGTGAAATC CGGCGATAGC CTAGGTACAA TTGCTGCGAA ATTTGATATT
TCAGTCAAAG AGTTAAAGCA GGCAAATAAC CTCAGCTCCG ATAGAATTAA AATCGGCCAA
GAGCTGACCC TGTTAACGCC GATGACAAGC GAAGATAACG CCTCGAGCGA GACGCCAAAA
CAGAGCAAAG CTCAAACAAC GTCTCAATCG GCTAAAACTA AAACCAGCAG TAAAACCGCT
GACAAGCCCG CCGCGAAAGC CAGCACATAC AAGGTGAAGT CCGGTGACTC GTTAGATAAA
ATCGCGCGCA AAAACAAAGT GAAGCTCGCG GATTTAATGA AGTGGAACCA GCTCAATGCC
AAGAGCATTA TTAAGCCTGG CCAAGAGCTA AAACTGTCGG AATAG
 
Protein sequence
MRKTFRHPSA FAALVVAILT AQLSGCATTS AQTSPTEYAA ALPEAEGTSE QTTQPQHVEA 
EVIDERYTDV WEKIQHARTI DVHDDAEVRK QRNFFDDKQK FMTQVTQRAE PFLYYIVSQL
ETRNMPLELA LLPIVESGYN PLAQANGPAG LWQMIPATGR NFGLTINSAY DGRKDALAST
DAVLDYLQHL HDTLGNDWIN AVAGYNSGEL VIKAAIDRNK AKGKPTDFWS LNIPARQVQT
VPKWLAFIQI IRAPSHYNLK VMPIANRPFL ERLPAPNGVE LSQIANAAGL TKAEFKTYNP
GYRQSVIPSK GKYQIALPIE NIGQYQENQH QLSAQKHYDS QSYIVKSGDS LGTIAAKFDI
SVKELKQANN LSSDRIKIGQ ELTLLTPMTS EDNASSETPK QSKAQTTSQS AKTKTSSKTA
DKPAAKASTY KVKSGDSLDK IARKNKVKLA DLMKWNQLNA KSIIKPGQEL KLSE