| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3185 |
|---|
| Symbol | |
|---|
| ID | 4253755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3806182 |
|---|
| End bp | 3806724 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638119826 |
|---|
| Product | membrane-flanked domain-containing protein |
|---|
| Protein accession | YP_735312 |
|---|
| Protein GI | 113971519 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3428] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00269357 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGAAC AAACAATTCA TGAAGCCCAA TTTGAAGATA ATTTAGGTTT GTACTGGTTA
CTCTCAGGGG CCGCTTACTT CACCTTAAGT ATTGTTGGTA TTCCCTTGTT ATTACTTTGG
TTTCCTATTG GGTTATGGGG AACTCGCCGC TACATCAGCA ATATGAGCGC ACGCTTAACT
AGCAAAAAGC TGATCGTGCG CAGAGGCATG TTAACTCGCA CAGAAAATAC GGTTCCCTTA
GATAAAATTA CCGATATCGC CCTCATTCAG GGGCCAATTA TGCGCCTGAT GGGATTACAT
AAACTCACCG TAGAAACCGC AGGACAATCG GGCGCAGGCG CTTTAATTAG TCTGGTTGGT
ATAGTCAACG CCCCCGATTT TAGGGCGCAG ATTTTGGAGC AAAAAGAACG CTTAAGTGAG
GCACATACCA CCAGCGAGAC GAGCGCTCCC ACAGAGGATA ACGTCCTGTT GACCCAACTT
GTGGAAATGA CGGCAAGCTT AAAACGCATC GAAGCCCTAC TCGCCTCAAA ATACAATTCT
TAA
|
|---|
| Protein sequence | MQEQTIHEAQ FEDNLGLYWL LSGAAYFTLS IVGIPLLLLW FPIGLWGTRR YISNMSARLT
SKKLIVRRGM LTRTENTVPL DKITDIALIQ GPIMRLMGLH KLTVETAGQS GAGALISLVG
IVNAPDFRAQ ILEQKERLSE AHTTSETSAP TEDNVLLTQL VEMTASLKRI EALLASKYNS
|
|---|
| |