| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3178 |
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| Symbol | |
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| ID | 4253748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3797265 |
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| End bp | 3797972 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638119819 |
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| Product | ribosomal small subunit pseudouridine synthase A |
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| Protein accession | YP_735305 |
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| Protein GI | 113971512 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.021025 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.1902 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGTTGA GTCGTCCAGT GCGTTTAGAT AAATTTATCT GTGAAAGTAC CTCGCTTACC
CGTTCTTTAG CGAAAAAAGC CTTACACCGT GGTGAGATTA CCTGTGACGG TATTGTGGTC
AAAGACTCTG GCTTTAAAGT GCTTGAGGGG ATGCAAGTAT GCCTCGAAGG TGAGCCTATC
TCCCTCGTCG GAGAGCGTTA CCTGATGCTT AATAAGCCCG TGGATACGAT TTGCTCGACT
ATCGATGAAG CCTATCCATC GGTATTGAGT CTGCTGGATA TCGAAAAGCC AGAAACTTTA
CACATTGCTG GCCGTTTAGA TGCCGATACT ACGGGCCTTG TGTTGATCAC CAGCGATGGC
CAATGGTCGC ATCGGATCAC CTCGCCGAAA AAAGACTGTG GCAAGCGTTA CTTAGTGACG
TTAGCCGATC CTGTGGATGG GAGTTTGGTA GGCATATTTG CCGCCGGAGT GGAACTGAGA
AATGAAGATG GCCTGACAAA GCCCGCGGTG CTTGAAATCA TCGAGCCACA GTTGGTGCGT
TTAACCATTA CCGAAGGTAA ATATCATCAA GTTAAGCGGA TGTTTGCTGC CGTGGGCAAT
CATGTGGTTG GCTTACACCG TGAAAGCATT GGCAGAATTG AATTAGACTC AGATCTTGCC
CCTGGTGAAT GGCGCTATCT GACGAGTGAG GAAATCGCCT CGATTTAA
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| Protein sequence | MKLSRPVRLD KFICESTSLT RSLAKKALHR GEITCDGIVV KDSGFKVLEG MQVCLEGEPI
SLVGERYLML NKPVDTICST IDEAYPSVLS LLDIEKPETL HIAGRLDADT TGLVLITSDG
QWSHRITSPK KDCGKRYLVT LADPVDGSLV GIFAAGVELR NEDGLTKPAV LEIIEPQLVR
LTITEGKYHQ VKRMFAAVGN HVVGLHRESI GRIELDSDLA PGEWRYLTSE EIASI
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