| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3076 |
|---|
| Symbol | |
|---|
| ID | 4253647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3676821 |
|---|
| End bp | 3678557 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638119718 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_735204 |
|---|
| Protein GI | 113971411 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.647061 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGA TTGTTATTGC TGCGGCAATT ATTGCAGCGG GCGCAGGTGC TTATTGGTAC
ACTCAACACG GAAGTAGCTC GAGTGCTTCG GCCAATCCTT TGCTAGATTA TGTTCCTGCC
GATACCCCAG TGTTTTCGGG CCAGTTAAAA CCTTTCCCCC TGAAAAACTA CCTGCAATCC
ATTTCTGGCA ATTACCAGCA ATATTCAACC GATTCGTTGG CCGAGTTAGG CGATTTAGAC
AGCCCAATGG CCAAGTTTTT TGTCAGCATC TATACGCAGT ATATGGATGG GATGAAAGAT
CCTACCCAAT TGCTTAAGAC CTTTGGTTTG CCAAATGAAG TCGAGCCTTT TTTCTATACT
TTAGGTGTGA TCCCTGTCCT TAAAATCAAT GTGGATCAAG TCGATGCGTT TTGGACTGTA
TTGGATAAAG CCGAGAAAGA CAGCGGCTTC ACCCATGAAA AGCGCACCTT AGCGGGCGTT
GATTATCGCG CTTATTCACT CGCTGAAGAA GGTTCTACTG AGAAGGTTGA CCTGTTATTT
GCCCATAAAG ATGGCATCTT AACTGTGACC TTATCTGGTA CAACGATTGA GCCAGAAATC
TTAGAAATGG CCTTTGGATT AAAGAAACCG ACTCAATCCT TAGCCGCTTC TGGCATGTTG
CAAGATATCA TTAAAACCCA TGGTTTTATG GAAGATAGCA TCAGCTTTAT CAACCACGTT
GAGATTGTTA AAGCGATTAC GTCTCCCGAT GGCAATATGT TAGCTAAACA GCTTACTCAA
TTCATGGCTG AAGAAAACCA TGGTGAAGAT CCGTTAGCGG AAATCCGTAC TCCTGAGTGC
AAAACTGAGC TAACCGCCAT TGCTGCCAAC TGGCCGCGCA CTGTGGGTGG CTTAACCGCA
TTTACATCGA CCGAAAAAGA AAGCCATATG GAGGCTTCTT TTGTGGTTGA AAGTAAAAAC
CAAGCAATCC TAACTGCGCT GCAAAAAATG CGTGGCTACA TTCCAACCCA CTTAGCTGAC
ATTAACAGCA CTATCTTCTC GATGGGACTG GGGATTGACG TTAATGAAGT TGCGCCTTCA
CTGACGGCGA TTTGGGACGA TCTGCAAAAG CCACAGTTAA CCTGTGCGCC GCTTGCCGAG
TTACAGGCCG AATTAAGCCA ACAAAGCCCT GCGATGCTGG GTATGTTTAC TGGCATGGCG
AACGGCGTTA AAGGTGTGAG CCTGTCATTG CTCGATTATA AGATGAGTTC TCAAGACCAA
GAGCCTAAGC TTGAAGGCTT AGATGCCTTA GTGAGCTTAA CGGCCGATAA CCCATCAATG
CTGTTCAACA TGGTGAAACC TTTTGCTCCT ATGCTGGCTG AACTGCAAGT TGCTGATAAT
GGCGAGCCTA CCGATTTATC ACCACTGTTA ATGTTGCCGC CTGAGATGAA CATCAAGCCG
ATGCTGGCCA TTAAGGGACA ACATTTAGTG GTTTACTCTG GCGATAAAGG CTTAGCGTTA
GCGAATAAAT TGGCTGGCGA AAAGCCATCG GCCAATGGGC TTTACAGCAT GTCGGCTGAT
TACGGTAAGA TGTTTACCCC AGTGTTAACG CTATTAGAAC TGACTGGCGA GCCGATTCCT
GAAGAGCTGC AAGCGCTGAA AGATTACAAT ATGCGCGTCC AAATGAGCTT CGATGTGAAT
AAACAGGGCT TAGTGTTTGG TTCAGTGATG AACTCAAAGG CGAGCGAGAA GAAGTAA
|
|---|
| Protein sequence | MKKIVIAAAI IAAGAGAYWY TQHGSSSSAS ANPLLDYVPA DTPVFSGQLK PFPLKNYLQS
ISGNYQQYST DSLAELGDLD SPMAKFFVSI YTQYMDGMKD PTQLLKTFGL PNEVEPFFYT
LGVIPVLKIN VDQVDAFWTV LDKAEKDSGF THEKRTLAGV DYRAYSLAEE GSTEKVDLLF
AHKDGILTVT LSGTTIEPEI LEMAFGLKKP TQSLAASGML QDIIKTHGFM EDSISFINHV
EIVKAITSPD GNMLAKQLTQ FMAEENHGED PLAEIRTPEC KTELTAIAAN WPRTVGGLTA
FTSTEKESHM EASFVVESKN QAILTALQKM RGYIPTHLAD INSTIFSMGL GIDVNEVAPS
LTAIWDDLQK PQLTCAPLAE LQAELSQQSP AMLGMFTGMA NGVKGVSLSL LDYKMSSQDQ
EPKLEGLDAL VSLTADNPSM LFNMVKPFAP MLAELQVADN GEPTDLSPLL MLPPEMNIKP
MLAIKGQHLV VYSGDKGLAL ANKLAGEKPS ANGLYSMSAD YGKMFTPVLT LLELTGEPIP
EELQALKDYN MRVQMSFDVN KQGLVFGSVM NSKASEKK
|
|---|
| |