| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2977 |
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| Symbol | |
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| ID | 4253548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3556314 |
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| End bp | 3557576 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638119613 |
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| Product | diguanylate cyclase with GAF sensor |
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| Protein accession | YP_735105 |
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| Protein GI | 113971312 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00653493 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAATTAA GGGATAATTT TAAACGTAAA ACCATAGACC GCTTAGACTA CCGCTATCAT
CTATTACTGC TGATAGTGCC AATACTGCTA TTCGTCTTAT TGTTTGTGTT TAATGCTCCC
ACCGAAGGCT GGACTATCCT TCCATTGCTG TTTGTCTGTC TTATCTATGT GTTTGCCTAC
AGCTTAATTT ATTATCTTCA TCAGGGTCGC TTAACGCGGC TATGGCTGCA TTTAGAGCAG
GTTGTCAGTA TTAACGATGC CATTTACGAG CTTGCCCACT TATCGAGCCA ATATAAAAAC
GAGCATGCGT TTCTCGACGC GCTGCTTAAT AAAGCCGTCT GTATCATTAA CGGTGCAGAA
ATGGGCAGCA TCATCAAAGT CAACGAAGAG ACCCATAGAC TGCATTTCGA ATCCGTTGTT
GGGCTCGACC TTAACATGCT CAAGCAATTG AATTTTTCCC TCGAGCAATC CTTCGAGTAT
CGTCTCACTA AAGGGAAATG TGACCGTGTA GTTGTGGTCG ATGATATGAA AAACATCAAT
GCCGCCAGCA CGCTCACCGA AGAAGAACAA CACATCTTAC TCACGGCTGC CAAACATCCT
ATCCGCTCTA CGTTGTCCAG CCCAATACGC ATTGACGGCA AACTCTACGG CATGCTTAAT
CTCGATAGCA GTAGCGTTGG CGCATTTAGC GACTACGACC GCAATCTGGT CTCTATCCTC
ACCCATGAAG CCAGCAATGC GATTGCCTTG TATCAAAAAT CGCTGCAAAT CACCAAATTG
GCGAATTTCG ACAATCTCAC CGGACTCTAT AACCGCAAAA ATTTTGAAGA TGCCCTACTT
CATTGGCAAC CCAAGGCACA CTTAGGCAGT TATTTGGTGA TTATCGATAT GGATAATCTC
AAGACCATTA ATGACCAACA GGGGCACCAA GTCGGCGATC TCGCCATTAA GCAAGTGGCT
AAGACTATCC TCGGCTTCTG GAAGCACAAA GGCATTATCT CGCGTTTTGG CGGCGATGAG
TTTGTTGCCC TCTGCCATGG TCCGCTTGAG CAGCTCGAAA ACGATCTCGA TGCCATGCGC
CTCAAGCTAC ACCAAGAGTC ATCCCTAAAC CTTAACTTCA GCGTGGGGAT GTCAGCATTT
GACAATGATT GGGCCAAGTC CTTTAAACTG GCGGACCATG CTATGTATGA GCAAAAACGC
GGTAAGAAAA AGGCAGTTAA AGCACTCGAA GCCATTGCGG CTAAGAATCA ACTAATGCAA
TAG
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| Protein sequence | MKLRDNFKRK TIDRLDYRYH LLLLIVPILL FVLLFVFNAP TEGWTILPLL FVCLIYVFAY
SLIYYLHQGR LTRLWLHLEQ VVSINDAIYE LAHLSSQYKN EHAFLDALLN KAVCIINGAE
MGSIIKVNEE THRLHFESVV GLDLNMLKQL NFSLEQSFEY RLTKGKCDRV VVVDDMKNIN
AASTLTEEEQ HILLTAAKHP IRSTLSSPIR IDGKLYGMLN LDSSSVGAFS DYDRNLVSIL
THEASNAIAL YQKSLQITKL ANFDNLTGLY NRKNFEDALL HWQPKAHLGS YLVIIDMDNL
KTINDQQGHQ VGDLAIKQVA KTILGFWKHK GIISRFGGDE FVALCHGPLE QLENDLDAMR
LKLHQESSLN LNFSVGMSAF DNDWAKSFKL ADHAMYEQKR GKKKAVKALE AIAAKNQLMQ
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